Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30970
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0098 + 5286827-5287019,5287380-5287476,5287872-5287992,528... 64 1e-10
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 35 0.070
06_01_0977 + 7585817-7585970,7586057-7586146,7586500-7586702,758... 30 2.6
08_02_0657 - 19749835-19751942,19753123-19753561 29 4.6
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 4.6
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 29 4.6
02_03_0204 - 16369800-16371758,16372260-16372331 29 4.6
10_08_0619 + 19312935-19313570 28 8.1
>10_02_0098 +
5286827-5287019,5287380-5287476,5287872-5287992,
5288458-5288511,5288868-5288918,5289004-5289099,
5289709-5289807,5289989-5290111,5290666-5290809,
5290902-5290973,5291053-5291128,5291208-5291350,
5291453-5291561,5291629-5291816,5292045-5292134,
5292256-5292438,5293187-5293360,5293466-5293537
Length = 694
Score = 64.1 bits (149), Expect = 1e-10
Identities = 50/186 (26%), Positives = 90/186 (48%)
Frame = +2
Query: 191 KKWKDLVTRYPEVESLNDVETPGFALGYKEFKETVSKLNTSIIPGELIFKLYDTHGLQEE 370
KK KD++ E ES + A G+++FK+ + S G F L+DT+G +
Sbjct: 118 KKIKDIIK--DEEESFENT----LAKGFEKFKKAADAVKES--GGTDAFVLWDTYGYPVD 169
Query: 371 LINRIAELNNMTTDKEGFQKLLSKHKHRHKTAFKEQALNKTILFNDAIDRLIKNGISRTN 550
L + ++ D+EGF + + + + + A + N +L +A +L G++ T+
Sbjct: 170 LTEVMGVDYGLSVDREGFDAAMEEARQKARNARFKAGENSIVLDANATAQLRNQGLASTD 229
Query: 551 DNFKYNYEITDSKLELGTLTTKLCAILNEDCQWIDVLDTIENRPYYLVTEDTNFYCEEGG 730
D+ KY Y+ DS ++ + +++ E+ + LV E T+FY E+GG
Sbjct: 230 DSPKYGYKDNDSVVK----------AIYTGSEYVSAASGDED--FGLVLESTSFYAEQGG 277
Query: 731 QISDSG 748
QI D+G
Sbjct: 278 QIYDTG 283
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 35.1 bits (77), Expect = 0.070
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +2
Query: 68 YDEVAATLSSTYPELVSNKSSAKLIIEHE-AQAYAKMRAGLAKKWKDLVTRYPEVESLND 244
Y V + +++T+PE ++ SS +I+H+ A + A L KD+ T EV+S
Sbjct: 2056 YVGVHSEVATTHPETITTHSSVNPVIDHKLANVQFESHASLHTSGKDITTMPSEVDSGAP 2115
Query: 245 VETPG 259
+ PG
Sbjct: 2116 SKAPG 2120
>06_01_0977 +
7585817-7585970,7586057-7586146,7586500-7586702,
7587274-7587452,7587913-7587991,7588403-7588537,
7588651-7588800,7588887-7588997,7589084-7590004,
7590351-7590623,7590853-7591062,7591425-7591573,
7591716-7592052
Length = 996
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 317 IPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGFQKLLSKHKHRHKTA 466
+ G+ +F LYDT+G E+ I+ + D +GF + + + + A
Sbjct: 491 LSGKDVFLLYDTYGFPVEITAEISGERGVIVDMKGFDMEMENQRKQSQAA 540
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 29.1 bits (62), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 656 VLDTIENRPYYLVTEDTNFYCEEGGQISDSGVARID 763
V+DT N +V DT +C+EG + R+D
Sbjct: 175 VMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEERLD 210
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 29.1 bits (62), Expect = 4.6
Identities = 22/99 (22%), Positives = 50/99 (50%)
Frame = +2
Query: 365 EELINRIAELNNMTTDKEGFQKLLSKHKHRHKTAFKEQALNKTILFNDAIDRLIKNGISR 544
E+L+ + E+N DK+ ++++ H+ A +E + + + + +N + +
Sbjct: 720 EKLLCALDEVNCCLLDKKNELDQVTENLHQQMQAVEEFEKLRVSMETELGRYMDENSVLK 779
Query: 545 TNDNFKYNYEITDSKLELGTLTTKLCAILNEDCQWIDVL 661
++ N ++ D++ L KLC+I++E C+ ID L
Sbjct: 780 SDLVSALNSKM-DAEESLREEKDKLCSIIDERCRNIDEL 817
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 113 VSNKSSAKLIIEHEAQAYAK----MRAGLAKKWKDLVTRYPEVESLNDVETP 256
VS +++ + H+ YA M L K KD++ RY SL +ETP
Sbjct: 54 VSERNTGATFVLHDGPPYANGDLHMGHALNKILKDIINRYKASSSLYPMETP 105
>02_03_0204 - 16369800-16371758,16372260-16372331
Length = 676
Score = 29.1 bits (62), Expect = 4.6
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Frame = +2
Query: 2 IRHEAFKICSDVFNNPHLLSNLYD----EVAATLSSTYPELVSN-KSSAKLIIEHEAQAY 166
+R+ + + C+D+++ P+ L NL+D +V+ T P+ ++ K L H +
Sbjct: 284 LRYLSLRGCTDIYHLPNSLGNLWDIQMLDVSGTSIIKLPKTITKLKKLHYLRAGHVPKDD 343
Query: 167 AKMRAGLAKKWKDLVTRYPEVESLNDVETPGFALGYKEFKETV 295
A L K+ DL E E +ND+E P + +F TV
Sbjct: 344 ATSSIEL-KESSDLSKM--EHEPINDLEIPDVEVKSVQFGMTV 383
>10_08_0619 + 19312935-19313570
Length = 211
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 23 ICSDVFNNPHLLSNLYDEVAATLSSTYPEL 112
I +++ NP + + LY+E+ AT+S + E+
Sbjct: 8 IMAELVKNPSIQAKLYEEIKATVSDDHDEI 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,435,217
Number of Sequences: 37544
Number of extensions: 364221
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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