Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30970
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)                60   3e-09
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     33   0.22 
SB_56321| Best HMM Match : DM (HMM E-Value=3.2)                        31   1.5  
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         30   2.0  
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_53254| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   30   2.7  
SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.1  
SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)                29   3.6  
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  

>SB_52095| Best HMM Match : tRNA-synt_2c (HMM E-Value=0)
          Length = 756

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
 Frame = +2

Query: 263 ALGYKEFKETVSKLNTSIIPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGFQ--KLL 436
           A G + F+ T SK+    IPG++ ++LYDT+G   +L   +AE   +  D E ++  K  
Sbjct: 422 ARGRRLFERTASKITDGTIPGDVAWRLYDTYGFPVDLTELMAEERGLRVDMEKYEEAKRR 481

Query: 437 SKHKHRHKTAFKEQALNKTILFNDAIDRLIKNGISRTNDNFKYNYEITD-SKLELGTLTT 613
           ++   R K +  + A+   +   D +  ++   +  T D  KY+Y            ++ 
Sbjct: 482 AQEIARGKDSASDDAITLDVHLLDKLQNVM--NLPPTIDLPKYSYSSDALGSYVFQPVSG 539

Query: 614 KLCAILNEDCQWIDVLDTIENRPYYLVTEDTNFYCEEGGQISDSG 748
            + A+L+E  ++++ +   E+    ++ + T+FY E+GGQI D G
Sbjct: 540 TIKALLHEK-EFVNEVPGGEH--CGIILDQTSFYAEQGGQIYDEG 581


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
 Frame = +2

Query: 365  EELINRIAELNNMTTDKEGFQKLLSKHKHRHKTAFKEQALNKTILFNDAIDRLIKNGISR 544
            E+L+N I +L     D +G +++  +++ R +   K++  NK  L  + ++ LIK+    
Sbjct: 1222 EDLLNDIVKLKMRGMDDDGTEEM--ENQIREELEVKQE--NK--LLQEQVENLIKDNALL 1275

Query: 545  TNDNFKYNYEITDSKLELGTLTTKLCAILNE-----DCQWIDVLDTIENRPYYLVTE 700
              DN   + EI + +LE+  L   +  +  E     D  W + +D +++R   L+ E
Sbjct: 1276 QKDNTDKSTEIQNMELEIKRLENIVSDLQKELENRPDDDWKEEVDGLKSRNEELLKE 1332


>SB_56321| Best HMM Match : DM (HMM E-Value=3.2)
          Length = 270

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 308 TSIIPGELIFKLYDTHGLQEELINRIAELNNM 403
           +S+IPG++I K YD+ G Q   I++ A+L N+
Sbjct: 103 SSVIPGQMIIKYYDSGGTQSLPIDK-ADLRNI 133


>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 308 TSIIPGELIFKLYDTHGLQEELINRIAELNNM 403
           +S+IPG++I K YD+ G Q   I++ A+L N+
Sbjct: 154 SSVIPGQMIIKYYDSGGTQSLPIDK-ADLRNI 184


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 278 EFKETVSKLNTSIIPGELIFKLYDTHGLQEEL 373
           E K+++ K++TS+I  E +  LY+  G +EEL
Sbjct: 852 EIKDSLYKMDTSVIDYENLKALYENRGTKEEL 883


>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2463

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/77 (20%), Positives = 31/77 (40%)
 Frame = +2

Query: 290  TVSKLNTSIIPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGFQKLLSKHKHRHKTAF 469
            T +K+N +    E + + Y TH          A++N   T  E   +  + H    +T  
Sbjct: 1351 THAKMNRTCTTHEQMNRTYTTHAQMNRTCTTHAQMNRTCTTHEQMNRTYTTHAQMSRTCT 1410

Query: 470  KEQALNKTILFNDAIDR 520
                +N+T   +  ++R
Sbjct: 1411 THAQMNRTCTTHAQMNR 1427


>SB_53254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +2

Query: 71  DEVAATLSSTYPELVSNKSSAKLIIEHEAQAYAKMRAGLAKKWKDLVTRYPEVESLNDVE 250
           + +  +L ST   L   K   K + +H+  +  K+   +  K+    + + + E ++  E
Sbjct: 6   ERIKKSLESTQAILKELKDEVKSLDDHDDGSDFKLLKLVYTKFPPKDSSWKKPEDMDKWE 65

Query: 251 TPGFALGYKEFKETVSKLNTSIIPGELIFKLYDTHG--LQEELINRIAE 391
           T GF++ Y   K  + K      PG++  + +      L EE+  R+ +
Sbjct: 66  TEGFSIEYSRRKSLLQKAVIVYHPGKVDEEEHGKQWKVLSEEITKRLTQ 114


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
 Frame = +2

Query: 53  LLSNLYDEVAATLSSTYPELVSNKSSAKLIIEHEAQAYAKMRAGLAKKWKDLVTRYP-EV 229
           +L+N  +E          EL   +S  +  +  +  +    +  L +  K+L+ + P E 
Sbjct: 176 ILNNNLEEKEKVYEKVLEELKRKESVMESELLRQKASLENEKEDLERSLKELLEKSPKEK 235

Query: 230 ESL--NDVETPGFALGYKEFKETVSKLNTSIIPGELIFKLYDTHGLQEELINRIAELNNM 403
           E +   ++ET    L  KE  +   KL   +       +L D   L+E+L+ + A+L  +
Sbjct: 236 EEMLSEELETQKELL-IKEKHKVEEKLQNEL---NQKLELKDKE-LEEKLLAQKADLEKV 290

Query: 404 TTDKEGFQKLLSKHKHRHKTA 466
             +KE  QK L +    HK+A
Sbjct: 291 IAEKEAQQKELQQELSIHKSA 311


>SB_34292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 25.8 bits (54), Expect(2) = 3.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 596 LGTLTTKLCAILNEDCQWIDVLDTIENRPYYLVTEDTNFYCEEGGQISDS 745
           LG LT    +ILN  C  +  +  +ENR    VTE T   C     IS S
Sbjct: 374 LGILTLPE-SILNGVCSQLVPVRFLENRESVCVTELTESLCSSSSIISAS 422



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 509 AIDRLIKNGISRTNDNFKYNYEITDSKL 592
           A+D L  N +  TN   +Y+Y+     L
Sbjct: 318 AVDTLQYNSLLNTNTRTRYSYQAPQQTL 345


>SB_56701| Best HMM Match : E-MAP-115 (HMM E-Value=0.63)
          Length = 936

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
 Frame = +2

Query: 77  VAATLSSTYPELVSN-KSSAKLIIEHEA-QAYAKMRAGLAKKWKDLVTRYPE-VESLNDV 247
           V   +  T  ELV N     K +I HE  + Y      + K  + +       +E   D+
Sbjct: 175 VPEPIKKTVKELVPNLNDKTKYVIHHETLRLYVSFGLKVTKIHRGVTFEESAWLEPYIDL 234

Query: 248 ETPGFALGYKEFKETVSKLNTSIIPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGFQ 427
            T   A    +F++   KL  + + G+ +          E + NR+     + TD++  +
Sbjct: 235 NTDLRAKATNDFEKDFFKLMNNSVFGKTM----------ENIRNRVDI--RLVTDEKQAK 282

Query: 428 KLLSKHKHRHKTAFKE 475
           KL+SK  ++H+T F E
Sbjct: 283 KLISKPNYQHRTIFCE 298


>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
 Frame = +2

Query: 116 SNKSSAKLIIEHEAQAYAKMRAGLAKKWKDLVTRYPEVESLNDVETPGFALGYKEFKETV 295
           S K+   + ++   +    + A L+ K+K+      E+ S  D E  G  +   E ++ +
Sbjct: 296 SPKTVIPVTVDECQEEKEDIMAVLSNKFKEGYNGIVEMFSRYDPENTG-KVSKHELRQVL 354

Query: 296 SKLNTSIIPGELIFKLYDTHGLQEELI--NRIAELNNMTTDKEGFQKLLSKHKHRHKT 463
           +    ++ P E+   L       +E++   +I ++    TDK   QK++   KHR KT
Sbjct: 355 ASYRLTLGPIEVEHFLSRFGCRHDEMVPYRKILDMCQDRTDKGLLQKIMEDPKHRPKT 412


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
 Frame = +2

Query: 71  DEVAATLSSTYPELVSNKSSAKLIIEHEAQ-AYAKMRAGLAKKWKDLVTRYPEVESLNDV 247
           D+ AA  +    ++V  ++  K    H  Q ++ + R    K   D V     +E    +
Sbjct: 485 DKKAADSNIQEGDIVVMRNETKGNKSHPCQLSWEETRRLQDKSHFDQVEIEAIIEQFKTL 544

Query: 248 ETPGFALGYKEFKETVSKLNT-SIIPGELIFKLYDTHGLQEELINRIAELNNMTTDKEGF 424
            T    +  + F + +  L   S +  E +FK YD++G QEE I          T+K+G+
Sbjct: 545 ATEDLGITREVFDQCLGPLGQQSNLVMEQMFKFYDSNGSQEEKIPH--AFKGYDTEKKGY 602


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,542,434
Number of Sequences: 59808
Number of extensions: 454168
Number of successful extensions: 1186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)