Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30966
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 29 0.70
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 27 2.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.6
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc... 26 6.6
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 26 6.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 8.7
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.7
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.7
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 25 8.7
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.70
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +2
Query: 17 CDHKFIENFIKNIWQTA*IFNKTSIYIFGDGSCGRKVNQQREIQWRKCIAIFTVFTN--- 187
CD + ++ QT F TS Y+ + G K + +I W I+I + T
Sbjct: 203 CDFGVSGELVNSVAQT---FVGTSTYMSPERIRGGKYTVKSDI-WSLGISIIELATQELP 258
Query: 188 WSYSDGDQNIPGCDIMDCI 244
WS+S+ D +I D++ CI
Sbjct: 259 WSFSNIDDSIGILDLLHCI 277
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 422 TYGTKDMCSCKRIETCHIVSNQHTTSWVSLSFELHIDTKSP 300
TYG MC K +E H VS++ V ++ + D ++P
Sbjct: 421 TYGLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAP 461
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 238 IHNITPRNILITIRITP-IGKYSKNCNAFSPL 146
IHN+TP N++I + P + + K+ +++ P+
Sbjct: 743 IHNVTPNNLVIFKNLFPEVLSFVKSNHSYDPI 774
>SPBC1703.08c |||5-formyltetrahydrofolate
cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 392 CSCTCLWYHKFEKMEVATIFRIDVGYKERLTIF 490
C CL Y K EV T IDV +KE +F
Sbjct: 44 CKNVCL-YMNMPKKEVRTRCLIDVAFKEGKNVF 75
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 162 LQFLLYLPIGVILMVIRIF-LGVILWIASIILPNKWAVSHMLTTLACWTFGV 314
+ FL LP V + + + + +++WI + I+ + S L+ L WT G+
Sbjct: 23 IPFLSKLPPKVSVPIFSLISVNIVVWIVAAIVISLVNRSLFLSVLLSWTLGL 74
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 250 IIDAIHNITPRNILITIRITPIG--KYSKNCNAFSPLNLSLLINFS 119
I D + + NI T + G K +K+ + F+PLNL +N+S
Sbjct: 578 ITDCLSFLLEHNIFNTFLVYNEGIVKLNKDFDDFTPLNLLKCVNYS 623
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 471 LYPTSMRKMVATSIFSNLWYQRHVQLQEN 385
LYP S RKM IF+ W ++ EN
Sbjct: 165 LYPESKRKMGLPVIFTRNWSDENLLPNEN 193
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 430 DGSCHHFSHRRWV*RTPHNFLK 495
+GS +H+SHR W+ RT LK
Sbjct: 553 NGSSNHYSHRVWL-RTKAEILK 573
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 435 KLPPFFASTLGIKNASQFSKKQHFSEV 515
K PPFF+S++ +K SK FSE+
Sbjct: 1186 KTPPFFSSSVPLKALICVSKLNLFSEL 1212
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 31 HREFYKKYMADSVNIQQNIYLHIR*WLLRQKS*STKRDSMEKM 159
HR M +NI ++ YLH R W + STK D K+
Sbjct: 753 HRILMFFQMTQIMNIMED-YLHYRQWRYLRLDGSTKADDRSKL 794
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 275 SHVNYFGLLDFWCLCEAQRTKRP 343
SH Y L D + LC R KRP
Sbjct: 12 SHRRYNPLTDSYVLCSPHRAKRP 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,007
Number of Sequences: 5004
Number of extensions: 73986
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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