Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30966
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0790 + 25253363-25254136,25259037-25259897 37 0.015
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944... 30 1.7
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 30 2.2
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 30 2.2
05_07_0074 - 27509124-27509199,27509613-27512143 30 2.2
02_03_0038 - 14220885-14221000,14221120-14221198,14221538-142216... 29 3.0
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 28 6.9
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 28 6.9
02_01_0581 - 4307182-4307358,4307387-4307461,4307559-4307621,430... 28 9.1
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 159 ALQFLLYLPIGVILMVIRIFLGVIL 233
AL F L+LP+GVIL VIRI +G++L
Sbjct: 298 ALAFFLFLPLGVILSVIRISIGILL 322
>07_03_1152 +
24392765-24392908,24393682-24393899,24394340-24394454,
24394605-24394694,24394857-24395015,24395462-24395581,
24396173-24396283,24396531-24396615,24397439-24397575
Length = 392
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -3
Query: 458 RCEKWWQLPSFQTYGTKDMCSCKRIETCHIVSNQHT---TSWVSLSFELHIDTKSPTSQS 288
+ E W + ++ D+ CK I H HT +W+S+SF++H+ S +
Sbjct: 282 KVESWLEDLLWERKLDMDIYRCKGILHVHNSDQVHTLQVATWISISFKIHLVVASTDIEG 341
Query: 287 S*HVTDC 267
H C
Sbjct: 342 FVHPVPC 348
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 495 KQHFSEVPTKPVLIQPESGPTNGKAVLRFTDWPFQIKSNVQPVAITVERAFTRA 656
+ H + P+LI PE N + + F F++ V P+AI + F A
Sbjct: 223 RDHVQHPDSNPLLIFPEGTCVNNQYTVMFKKGAFELGCAVCPIAIKYNKIFVDA 276
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 531 LIQPESGPTNGKAVLRFTDWPFQIKSNVQPVAITVERAFTRATVQRRQYS 680
++Q E G + K + D+PF+I N +IT++R T++ Y+
Sbjct: 93 IVQSEEGAASAKQIDLPEDFPFEIIDNPGDQSITLKREIAGETIKATVYT 142
>05_07_0074 - 27509124-27509199,27509613-27512143
Length = 868
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +3
Query: 348 CSVLVANYVTCFDSLAAAHVFGTISLKRWKLPPFFASTLGIKNASQFSKK 497
C +LV + D+ A HV GTI R K P F L I + + K
Sbjct: 556 CEILVTAQFSPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDK 605
>02_03_0038 -
14220885-14221000,14221120-14221198,14221538-14221641,
14221869-14222049,14224747-14224836,14224906-14225025,
14225343-14225528,14225678-14225839,14226958-14227002
Length = 360
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 486 FSKKQHFSEVPTKPVLIQPESGPTNGKAVLRFTDWPFQIKSNVQPVAITVERAFT 650
++ ++H P++I PE N + + F F++ V P+AI + FT
Sbjct: 263 YNLQEHVQLPDNNPLMIFPEGTCVNNRYTVMFKKAAFELGCIVCPIAIKYNKEFT 317
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 652 RVKARSTVMATGCTLLLIWNGQSVKRNTALPFVGPLSG 539
R++ V+ G T L+W S+ R +P +GP G
Sbjct: 667 RIRCGQFVLLFGVTSCLLWTLWSISRAIIVPLMGPEEG 704
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 28.3 bits (60), Expect = 6.9
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Frame = -1
Query: 748 ACSVYTVAGDSRNHAASRHGKRALYWRRCT--------VARVKARSTVMATGCTLLLIWN 593
+ S + AGDSRN A S A RCT +AR K RS +M I +
Sbjct: 191 SASTSSYAGDSRNQACST--AEAAEVIRCTSMSTGNNLLARSKTRSRLMDPPPP--TISH 246
Query: 592 GQSVKRNTALPFVG---PLSGCINTGFVGTS 509
+RN FVG P SG + +G +G S
Sbjct: 247 PTEAERNDRKSFVGKGPPKSGQLRSGLIGKS 277
>02_01_0581 -
4307182-4307358,4307387-4307461,4307559-4307621,
4307715-4307819,4307917-4308024,4308123-4308260,
4308357-4308446,4308533-4308658,4308728-4308781,
4308865-4308936,4309060-4309167,4309272-4309343,
4309456-4309518,4309747-4309908
Length = 470
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -2
Query: 579 NVTPLYRSWVHFLVVSTQALLAPQRNVAF*KIVRRSLYPTSMRKMVATSIFSNLWYQRH 403
++T LYR V Q L PQ+ KI+ R L P+ + + + IF + W Q H
Sbjct: 212 SLTNLYRRISRAQFVFPQWLSVPQK-----KIIIRILDPSPITRAKISDIFDDKWLQDH 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,343,067
Number of Sequences: 37544
Number of extensions: 482100
Number of successful extensions: 1090
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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