Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30966
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.0  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 458 RCEKWWQLPSFQTYGTKDMCSCK 390
           +C++ W L S     T+ MCS K
Sbjct: 131 KCDRLWVLDSGLVNNTQPMCSPK 153


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 333 QRDPRCSVLVANYVTCFDSLAAAHVFGTISLKRWKLPPFFASTL 464
           +R+PR +VL A  +T       AH   + +   W++   + S L
Sbjct: 323 ERNPRSAVLAAREITSSSCSYMAHEKLSYAFSVWRMEDDWNSNL 366


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 458 RCEKWWQLPSFQTYGTKDMCSCK 390
           +C++ W L S     T+ MCS K
Sbjct: 131 KCDRLWVLDSGLVNNTQPMCSPK 153


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 458 RCEKWWQLPSFQTYGTKDMCSCK 390
           +C++ W L S     T+ MCS K
Sbjct: 131 KCDRLWVLDSGLVNNTQPMCSPK 153


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 145 NLSLLINFSAARAITEYVDR 86
           N+S +IN+   + I EYV R
Sbjct: 519 NVSHVINYDLPKGIDEYVHR 538


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 191 SYSDGDQNIPGCDIMDCINYI 253
           SYS  ++ +  CD  +C  Y+
Sbjct: 662 SYSSNNKTLCKCDAQNCRRYL 682


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 298 QAKVVNM*LTAHLLGNI--IDAIHNITPR 218
           QA V+   LTA LLGN   +  +  I PR
Sbjct: 16  QAHVIPAELTAKLLGNCVRVSPVITIEPR 44


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 649 VKARSTVMATGCTLLLIWNGQSVKRNTALPFVG 551
           V  ++ ++ T C +  IW    +K N A  F G
Sbjct: 45  VDEKNQILTTNCWVTQIWTDHHLKWN-ASEFAG 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,169
Number of Sequences: 438
Number of extensions: 5101
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)