Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30963
(318 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.27
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 0.62
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 0.62
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 1.4
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.5
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24) 27 4.4
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 26 5.8
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.8
SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56) 26 5.8
SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
SB_41191| Best HMM Match : PadR (HMM E-Value=8.6) 26 7.6
SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16) 26 7.6
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.6
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 26 7.6
SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8) 26 7.6
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.27
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 64 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 213
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 0.62
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 127 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 219
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 0.62
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 10 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 126
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +1
Query: 10 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 189
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/71 (21%), Positives = 35/71 (49%)
Frame = +1
Query: 10 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 189
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 190 PVLLAPIPYEF 222
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 32 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 166
++S+ PS KT+ ++R RKP +PAR ST ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677
>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
Length = 729
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +1
Query: 28 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 192
V H ++ F+ ++++ +A+ G+ ++L +P AH++ EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 5 YRSASISVLSMSSTPSADKTSL-RESKRMRGY*RKPRLPARPS 130
YR +S S S+PS+D TS R+SK + Y R P S
Sbjct: 234 YRKSSFDASSPESSPSSDSTSSNRKSKFILDYNDNKRDPITAS 276
>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2839
Score = 26.2 bits (55), Expect = 5.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 118 GKTVNLKRQPAPPKAAHIVSGTEK--PVLLAPIPYEFVA*SPIKY 246
G T+ + AP K + S K PV AP+ Y V +P+KY
Sbjct: 928 GATIEHALESAPVKYTPVESAPVKYTPVESAPVKYTPVESAPVKY 972
>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +1
Query: 19 NIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 129
N H HS CRQ+ + K E + K AK TV
Sbjct: 144 NALSHHSNHSFCRQEQHIQKKNTEEIEKAAKNQSNTV 180
>SB_23489| Best HMM Match : DUF1393 (HMM E-Value=0.56)
Length = 223
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 61 DFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 219
D +R K+ LK+ + A ++VN R P+P + ++ + + L AP+ E
Sbjct: 167 DAAERQKKRRERLKQWRKA-RSVNRDRGPSPGRRKNVAAFDQDDYLEAPMDVE 218
>SB_42848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 94 LLKEAKAAGKTVNLKRQPAPPK 159
++++ K G TVNL RQ PPK
Sbjct: 41 IIQKWKEYGTTVNLPRQGRPPK 62
>SB_41191| Best HMM Match : PadR (HMM E-Value=8.6)
Length = 276
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 198 TCAYPIRIRSVKSNKIFLRTKKKKKNSRGGPV 293
+C++P S KS I TK+ + N+ P+
Sbjct: 38 SCSFPENATSTKSKLIHSNTKRDRNNNLSAPM 69
>SB_1005| Best HMM Match : GPP34 (HMM E-Value=0.16)
Length = 265
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 25 RVEHVKHSKCRQDFLKRVKENERLLKEAKAA 117
R ++H+ QD+ + K ERLLKE K A
Sbjct: 226 RAPILEHNFSDQDYNRAKKNIERLLKEGKPA 256
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 4 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 153
I +++N + ++ + + KRV++N+RL + K VN KR P
Sbjct: 170 IERKLNNKAREMESIRFNIENPKRVRDNKRLAQGGHEKAKVVN-KRTDGP 218
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 230 YATNSYGIGASKTGFSVPLTMW 165
YA +SY IGA+ T SV L+ W
Sbjct: 286 YAGHSYRIGAAITAASVGLSPW 307
>SB_9429| Best HMM Match : Pili_assembly_N (HMM E-Value=5.8)
Length = 125
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 101 RKPRLPARPS---T*RDSQLPLKLPTSSVELRNPSYL 202
++ RLP + T ++S LPL++ SV+LR +YL
Sbjct: 85 KESRLPPQVQIKRTEKESDLPLQVQIKSVQLRRVTYL 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,738
Number of Sequences: 59808
Number of extensions: 163231
Number of successful extensions: 567
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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