Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30961
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical ... 31 0.97
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 29 3.9
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 6.8
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 28 6.8
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 6.8
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 6.8
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 27 9.1
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 27 9.1
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 27 9.1
>AF026212-4|AAF99973.2| 386|Caenorhabditis elegans Hypothetical
protein F52G3.5 protein.
Length = 386
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 526 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPTVSPTE 663
TTT P T KK ++R+ PKT + + +T T APT + E
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTTTEE 241
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 517 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 660
P TTT T P T + +P S T +T + + ++T+T AP+ S T
Sbjct: 118 PVQTTTTTAPET--TSTEPPSSSTSPVQTTTTTAPETTSTEAPSSSTT 163
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 517 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 660
P TTT T P T + +P S T +T + + ++T+T +P+ S T
Sbjct: 210 PVQTTTTTAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTT 255
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 517 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 660
P TTT T P T + +P S T +T + + ++T+T +P+ S T
Sbjct: 486 PVQTTTITAPET--TSTEPPSSSTTPVQTTTTTAPETTSTESPSSSTT 531
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 520 KATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTVSPT 660
+ TTT +P T S KK + T P K S+ +T T +P V T
Sbjct: 375 QVTTTTKKPSTTTSTKKLTTTTTTTP--KPSQKPTTTTTKSPVVITT 419
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 131 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 3
+AW D + +N + E + LS+ Q+HC+ CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 456 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 551
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 456 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 551
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 131 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 3
+AW D + +N + E + LS+ Q+HC+ CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 456 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 551
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 456 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 551
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 GRRNWKVHSFPVQPSLLY 100
GR++WK H F ++PS LY
Sbjct: 340 GRKSWKKHYFVLRPSGLY 357
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 GRRNWKVHSFPVQPSLLY 100
GR++WK H F ++PS LY
Sbjct: 357 GRKSWKKHYFVLRPSGLY 374
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 47 GRRNWKVHSFPVQPSLLY 100
GR++WK H F ++PS LY
Sbjct: 469 GRKSWKKHYFVLRPSGLY 486
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,103
Number of Sequences: 27780
Number of extensions: 218488
Number of successful extensions: 909
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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