Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30958
(796 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06) 31 1.4
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 31 1.4
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18) 30 2.5
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8) 29 3.3
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0) 29 4.3
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 29 4.3
SB_42883| Best HMM Match : PT (HMM E-Value=0.21) 29 5.7
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4) 29 5.7
SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 29 5.7
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022) 28 7.6
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05) 28 7.6
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23) 28 7.6
>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 541 ATTTCTRPRTRFSLKKPARSRTLAPKTKASR--SRDSTNTLAPDGVTYRVDYTADENGFV 714
+TTT T T++ + K +TLAP T A T T P T ++A+ +GF+
Sbjct: 235 STTTDTNTNTQWFIDKVMSEKTLAPHTAAEYRIMLTRTRTTVPYTATIIAHFSAELDGFL 294
Query: 715 ADG 723
G
Sbjct: 295 RWG 297
>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
Length = 472
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 541 ATTTCTRPRTRFSLKKPARSRTLAPKTKASR--SRDSTNTLAPDGVTYRVDYTADENGFV 714
+TTT T T++ + K +TLAP T A T T P T ++A+ +GF+
Sbjct: 263 STTTDTNTNTQWFIDKVMSEKTLAPHTAAEYRIMLTRTRTTVPYTATIIAHFSAELDGFL 322
Query: 715 ADG 723
G
Sbjct: 323 RWG 325
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 99 YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 209
YNR+ + P++ +PGR Y PGR DP GR P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709
>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
Length = 516
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 429 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEKAGKVENV 608
+ ++ P V +K P G DY Y + D +A YH L E + +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240
Query: 609 G 611
G
Sbjct: 241 G 241
>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
Length = 541
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +1
Query: 535 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 663
PK T TRP+TR + R +T PKTK S+S+ T T P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309
>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
Length = 1381
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 552 LYETENKILAEKAGKVENVGTENEGIKVKGFYEYVGPRRCHLQ 680
+Y T + + G++E +G ++ +K++GF +G HLQ
Sbjct: 401 IYRTGDLVRWTPDGEIEYLGRIDDQVKIRGFRVEIGSIETHLQ 443
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 455 NVCGCDHLAGNVCGCDWHGNGRL 387
N GC+ GN GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404
>SB_42883| Best HMM Match : PT (HMM E-Value=0.21)
Length = 134
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 550 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPDGVTYR 681
T ++P + S ++P R T P + SR R S T PD T R
Sbjct: 19 TTSQPNNQ-SARQPVRLTTSQPDNQLSRKRASQTTSYPDNETAR 61
>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
Length = 296
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 541 ATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNT--LAPDGVTYRVDYTADENGFV 714
+TTT T T++ + K +TLAP T A T T P T ++A+ +GF+
Sbjct: 87 STTTDTNTNTQWFIDKVMSEKTLAPYTAAEYRIMLTRTRITVPYTATIIAHFSAELDGFL 146
Query: 715 ADG 723
G
Sbjct: 147 RWG 149
>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 564 ENKILAEKAGKVENVGTENEGIKVKGFYEYVGPRRCH 674
EN L + GK + + + I G+YEY GP+R +
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMY 189
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 27 VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 143
VFL +S+TV + + GKY P YN + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168
>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
Length = 395
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 555 YETENKILAEKAGKVENVGTENEGIKVKGFYEYVGPRRCH 674
+ ++N L + GK + + + I G+YEY GP+R +
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMY 353
>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 277 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 366
PVL +P S PRR S +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140
>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 464 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 336
L GN CG L GN CG +GN GN +G+ + V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279
>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
Length = 304
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 277 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 366
PVL +P S PRR S +LTR PA
Sbjct: 86 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115
>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
Length = 877
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 449 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 369
CG CD AG V CDW G+G L D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,170
Number of Sequences: 59808
Number of extensions: 368943
Number of successful extensions: 1195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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