Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30956
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   4.7  
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)                  27   8.3  

>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 179 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 21
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 173  RKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLL 63
            +K  E ++N  +S     +  +++V SSP  +++KLL
Sbjct: 1002 KKAAEELENKNLSNVWTILETMSQVDSSPHHVFLKLL 1038


>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 YNIFIID*PKRCGRRNTVRHMRNSCDGMFVRL 301
           YN+   D  + C   N  RH++ +CD +FVRL
Sbjct: 530 YNLVNTDTIETC---NLHRHLKKTCDRLFVRL 558


>SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)
          Length = 712

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +2

Query: 236 RCGRRNTVRHMRNSCDGMFVRLVHF*FQNETIKRTNALVRSVVYVILYVPCAILKFYSLK 415
           RCGR  T++H+  SCD    R+  + F          L R+V  VIL +  +  K    K
Sbjct: 577 RCGRTETLKHVFLSCD-FATRVWDWAFPIAERINATPLTRNVNNVILTLGLSTAKGDKSK 635

Query: 416 RIIIFHMVFLFK 451
             ++   V++FK
Sbjct: 636 TNLV---VYIFK 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,851,970
Number of Sequences: 59808
Number of extensions: 215858
Number of successful extensions: 366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)