Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30956
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal hydrolase-r...    28   2.9  
At1g17360.1 68414.m02116 COP1-interacting protein-related simila...    28   2.9  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   3.9  
At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ...    27   6.8  

>At1g65200.1 68414.m07392 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1101

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 239  CGRRNTVRHMRNSCDGMFVRLVHF*FQNETIKRTNALVRSVVYVI 373
            CG+ N VRH  +SC  +F  ++ +  +NET K  +  ++++ + I
Sbjct: 977  CGKANFVRHTISSCPPIFTIVLKW-EKNETEKEISGTLKAMDWEI 1020


>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
           to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
           [Arabidopsis thaliana]
          Length = 1032

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = -3

Query: 179 ATRKTNEHMKNFKISRT--KKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSDRMTQV 6
           +TR+  E  ++F  SRT  KK+  PI+ + S  +    KL++GQ I  +    S ++ +V
Sbjct: 609 STRQRAEKFRSFN-SRTSSKKYQHPISSLQSEEENEKDKLVSGQSI-GKGASKSSQVRKV 666

Query: 5   P 3
           P
Sbjct: 667 P 667


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 84  LRRGGDFCDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 194
           ++R    C W  +  G  N++ F MFI  +  +C +VF
Sbjct: 169 VQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIYVF 206


>At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein
           similar to Golgi-specific DHHC zinc figer protein [Mus
           musculus] GI:21728103; contains Pfam profile PF01529:
           DHHC zinc finger domain
          Length = 286

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 CDWTHKFFGPGNFKIFHMFIGFARCVC 185
           C W +   G  N+K+F +F+ +A   C
Sbjct: 127 CIWINNCVGHTNYKVFFVFVVYAVTAC 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,791,545
Number of Sequences: 28952
Number of extensions: 147660
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)