Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30949
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 429 e-121
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 242 3e-65
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 235 4e-63
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 131 1e-31
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 109 3e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 98 1e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 6e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 9e-10
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 46 5e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 34 0.022
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.5
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.4
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 429 bits (1056), Expect = e-121
Identities = 203/228 (89%), Positives = 216/228 (94%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 181
FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGR
Sbjct: 124 FETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGR 183
Query: 182 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP 361
DLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELP
Sbjct: 184 DLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELP 243
Query: 362 DGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGT 541
DGQVITIGNERFR PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGT
Sbjct: 244 DGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGT 303
Query: 542 TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 685
TMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLST
Sbjct: 304 TMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLST 351
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 242 bits (593), Expect = 3e-65
Identities = 110/228 (48%), Positives = 159/228 (69%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 181
+ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR
Sbjct: 129 YETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGR 188
Query: 182 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP 361
D+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LP
Sbjct: 189 DVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLP 248
Query: 362 DGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGT 541
D Q IT+G E F PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+
Sbjct: 249 DNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGS 308
Query: 542 TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 685
T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLST
Sbjct: 309 TLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLST 356
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 235 bits (575), Expect = 4e-63
Identities = 114/237 (48%), Positives = 163/237 (68%), Gaps = 11/237 (4%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 181
FE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGR
Sbjct: 124 FERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGR 183
Query: 182 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP 361
D T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + +T L ++Y LP
Sbjct: 184 DATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLP 243
Query: 362 DGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGT 541
DG+VI +G+ER+ CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG+
Sbjct: 244 DGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGS 303
Query: 542 TMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWIGGSILASL 679
+MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA +
Sbjct: 304 SMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADI 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 131 bits (316), Expect = 1e-31
Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 29/253 (11%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAI 157
FE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 147 FESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
Query: 158 LRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA--TAA 325
+ LAGRD+T ++ +L +R S TAER IKE+ CYV D +E +
Sbjct: 207 KTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDRE 261
Query: 326 ASTSLEKSYELPDGQ--VITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVD 496
L+ + E G I +G ERF PE F P + + E V N + +D
Sbjct: 262 PDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPID 321
Query: 497 IRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI--------------KIKIIAPPE 634
+RK LY N V+SGG+T++ +R+Q+++ + I + +I+
Sbjct: 322 VRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKR 381
Query: 635 RKYSVWIGGSILA 673
++ +VW GGS+LA
Sbjct: 382 QRNAVWFGGSLLA 394
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 109 bits (263), Expect = 3e-25
Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 20/204 (9%)
Frame = +2
Query: 83 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 262
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 263 DIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 382
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 383 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 562
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 563 DRMQKEITALAPSTIKIKIIAPPE 634
R+ E+ +LAP+ ++K+ P +
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSD 360
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 97.9 bits (233), Expect = 1e-21
Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 11/162 (6%)
Frame = +2
Query: 227 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 406
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 407 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 559
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 560 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASL 679
++R+Q E+ LA S I + +VW GGSILASL
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASL 401
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.9 bits (161), Expect = 6e-13
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Frame = +2
Query: 449 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 628
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 629 ---PERKYSVWIGGSILASLST 685
ER Y+ W+GGSIL+SL T
Sbjct: 385 GHVVERSYASWLGGSILSSLGT 406
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 181
FE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGN 181
Query: 182 DLTDYLMKILTERGY 226
+ D L + L ++ +
Sbjct: 182 AINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 9e-10
Identities = 25/92 (27%), Positives = 50/92 (54%)
Frame = +2
Query: 389 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 568
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 569 MQKEITALAPSTIKIKIIAPPERKYSVWIGGS 664
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
Score = 53.2 bits (122), Expect = 3e-08
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 175
FE +N+P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+
Sbjct: 139 FELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWG 198
Query: 176 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK 346
G + YL+K+ + SF + C+V+ D+ ++A A LE+
Sbjct: 199 GSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/91 (29%), Positives = 44/91 (48%)
Frame = +2
Query: 2 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 181
FE P +A + ++ LYA G G+V+D G + PI +G + A +L L GR
Sbjct: 170 FEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGR 229
Query: 182 DLTDYLMKILTERGYSFTTTAEREIVRDIKE 274
+T +L +L E + ++ + DI E
Sbjct: 230 YMTQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +2
Query: 503 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSI 667
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACI 584
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +2
Query: 41 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 220
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 221 GYSF 232
+ +
Sbjct: 340 HFPY 343
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 575 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 685
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 126 STKVTLCPTPSSVWTW 173
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 454 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 582
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,438,425
Number of Sequences: 5004
Number of extensions: 46537
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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