Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30946
         (569 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p pro...   219   3e-57
AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB ...   219   3e-57
AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell fa...    28   7.7  

>AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p
           protein.
          Length = 205

 Score =  219 bits (534), Expect = 3e-57
 Identities = 95/170 (55%), Positives = 124/170 (72%)
 Frame = +3

Query: 15  KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 194
           KV VVRCE++N+SG+F+RNK+K +++LRKRCNVNPARGPFHFRAPS+I +K VRGMIPHK
Sbjct: 34  KVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHK 93

Query: 195 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 374
           T+RG+ AL RLR +DG P P+D               L+  R YC VGRLSHE+GW Y+D
Sbjct: 94  TKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQD 153

Query: 375 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 524
           V++ LE KRK K    + + ++LK++T  A E ++KA  PF  II+SYGY
Sbjct: 154 VIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203


>AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB
           protein.
          Length = 205

 Score =  219 bits (534), Expect = 3e-57
 Identities = 95/170 (55%), Positives = 124/170 (72%)
 Frame = +3

Query: 15  KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 194
           KV VVRCE++N+SG+F+RNK+K +++LRKRCNVNPARGPFHFRAPS+I +K VRGMIPHK
Sbjct: 34  KVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHK 93

Query: 195 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 374
           T+RG+ AL RLR +DG P P+D               L+  R YC VGRLSHE+GW Y+D
Sbjct: 94  TKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQD 153

Query: 375 VVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 524
           V++ LE KRK K    + + ++LK++T  A E ++KA  PF  II+SYGY
Sbjct: 154 VIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203


>AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell factor
            HCF protein.
          Length = 1500

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +1

Query: 322  ITVM*ADCPMKLDGNTVMLFVSLKTRGRARLLRELPMKR----NLRGSPRMLVRRCRRRQ 489
            +TVM  +  M   GN VM+     +         L  K+    N  GSPR +    +   
Sbjct: 919  VTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSAKKSFVFNAGGSPRTVTLATKSIN 978

Query: 490  HHSLPSSNPM 519
              S+P S P+
Sbjct: 979  AKSIPQSQPV 988


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,943,841
Number of Sequences: 53049
Number of extensions: 578936
Number of successful extensions: 1622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)