Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30946
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 189 1e-48
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 189 1e-48
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 32 0.25
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 30 1.3
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 1.8
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 7.2
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 27 9.5
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 27 9.5
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 27 9.5
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 189 bits (460), Expect = 1e-48
Identities = 88/172 (51%), Positives = 114/172 (66%)
Frame = +3
Query: 12 NKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH 191
+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PH
Sbjct: 32 DKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPH 91
Query: 192 KTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYR 371
KT RG AL+ LR Y+G P + F L+P R +C VGRLSHE+GW+++
Sbjct: 92 KTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQ 150
Query: 372 DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 527
DVV KLE KRK K +KK+ ++ A + + + II++ GYN
Sbjct: 151 DVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 189 bits (460), Expect = 1e-48
Identities = 88/172 (51%), Positives = 114/172 (66%)
Frame = +3
Query: 12 NKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPH 191
+KVVV+R E+I ISGNF R+KLK MSFLRKRCN+NPARG FH+RAP KI W+TVRGM+PH
Sbjct: 32 DKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPH 91
Query: 192 KTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYR 371
KT RG AL+ LR Y+G P + F L+P R +C VGRLSHE+GW+++
Sbjct: 92 KTNRGNEALKNLRAYEGVPAKYQK-TKSLHAPSASRFRLQPRRKFCVVGRLSHEVGWQFQ 150
Query: 372 DVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGYN 527
DVV KLE KRK K +KK+ ++ A + + + II++ GYN
Sbjct: 151 DVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGYN 202
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 32.3 bits (70), Expect = 0.25
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 321 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGEKV 476
+YC G+ S H I WKYRD V ++ K K A++ R A E K I D +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 429 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 319
R+ S C S L +E HHGI + G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 411 PCPSSCLQAYEQHHGISIQFHGTVCLHD 328
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 386 LTNNITVFPSNFMGQSAYMTVITARFQTE 300
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 235 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 59
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 58 LPEMLI 41
LPE +
Sbjct: 210 LPEWTV 215
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 235 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 59
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 58 LPEMLI 41
LPE +
Sbjct: 210 LPEWTV 215
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 235 YVRSLLRAF-LPRSVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKK 59
YV+ +L++F + S L + L + + + WKGP +L+ + + +F+K
Sbjct: 150 YVQEVLKSFDVSPSALLVLFGLGNYGVLGMMCIHWKGPLRLQQFYLITMSALMALVFIKY 209
Query: 58 LPEMLI 41
LPE +
Sbjct: 210 LPEWTV 215
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,312
Number of Sequences: 27780
Number of extensions: 281793
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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