Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30946
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)         165   2e-41
At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA) si...   165   2e-41
At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC) ri...   164   3e-41
At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB) si...   163   7e-41
At1g78630.1 68414.m09164 ribosomal protein L13 family protein si...    32   0.31 
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR...    29   1.7  
At3g15590.1 68416.m01975 DNA-binding protein, putative similar t...    29   2.2  
At3g11370.1 68416.m01382 DC1 domain-containing protein contains ...    29   2.9  
At5g19400.1 68418.m02312 expressed protein                             28   3.8  
At4g03180.1 68417.m00435 expressed protein                             28   3.8  
At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein co...    27   6.7  
At1g53110.1 68414.m06014 expressed protein                             27   8.8  

>At5g48760.1 68418.m06034 60S ribosomal protein L13A (RPL13aD)
          Length = 206

 Score =  165 bits (400), Expect = 2e-41
 Identities = 77/148 (52%), Positives = 98/148 (66%)
 Frame = +3

Query: 15  KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 194
           KVV+VRCE+I +SG   R K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37  KVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96

Query: 195 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 374
           T+RG  AL RL+ Y+G P P+D               L+ G  YC +GRLS E+GW + D
Sbjct: 97  TKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYD 156

Query: 375 VVRKLEDKRKGKAVKRVAYEKKLKRITK 458
            +++LE KRK +A   V YE+K K++ K
Sbjct: 157 TIKELETKRKERA--HVVYERK-KQLNK 181


>At3g07110.1 68416.m00847 60S ribosomal protein L13A (RPL13aA)
           similar to ribosomal protein L13A GB:O49885 [Lupinus
           luteus]
          Length = 206

 Score =  165 bits (400), Expect = 2e-41
 Identities = 76/155 (49%), Positives = 102/155 (65%)
 Frame = +3

Query: 18  VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 197
           +VVVRCE+I +SG   R K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38  IVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97

Query: 198 ERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 377
           +RG NAL RL+ ++G P P+D               L+ G  YC +GRLS E+GW + D 
Sbjct: 98  KRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDT 157

Query: 378 VRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 482
           +++LE+KRK +A      +K+L ++   A EKV++
Sbjct: 158 IKELENKRKERAQAVYERKKQLSKLRAKA-EKVAE 191


>At4g13170.1 68417.m02049 60S ribosomal protein L13A (RPL13aC)
           ribosomal protein L13a -Lupinus luteus,PID:e1237871
          Length = 206

 Score =  164 bits (399), Expect = 3e-41
 Identities = 79/158 (50%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
 Frame = +3

Query: 15  KVVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHK 194
           +VVVVRCE+I +SG   R K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHK
Sbjct: 37  EVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHK 96

Query: 195 TERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRD 374
           T+RG  AL RL+ ++G PPP+D               L+ G  YC +GRLS E+GW + D
Sbjct: 97  TKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYD 156

Query: 375 VVRKLEDKRKGKAVKRVAYEKKLKRITK--DAGEKVSK 482
            +++LE KRK ++  +V YE+K K++ K     EKV++
Sbjct: 157 TIKELETKRKERS--QVMYERK-KQLNKLRTKAEKVAE 191


>At3g24830.1 68416.m03115 60S ribosomal protein L13A (RPL13aB)
           similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from
           [Rattus norvegicus]
          Length = 206

 Score =  163 bits (396), Expect = 7e-41
 Identities = 76/147 (51%), Positives = 99/147 (67%)
 Frame = +3

Query: 18  VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 197
           VVVVRCE+I +SG   R K+K M FLRKR N  P+ GP HFRAPSKI W+TVRGMIPHKT
Sbjct: 38  VVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKT 97

Query: 198 ERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDV 377
           +RG  AL RL+ ++G PPP+D               L+ G  YC +GRLS E+GW + D 
Sbjct: 98  KRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDT 157

Query: 378 VRKLEDKRKGKAVKRVAYEKKLKRITK 458
           +++LE KRK ++  +  YE+K K++TK
Sbjct: 158 IKELEVKRKERS--QALYERK-KQLTK 181


>At1g78630.1 68414.m09164 ribosomal protein L13 family protein
           similar to ribosomal protein L13 GI:170132 from
           [Spinacia oleracea]
          Length = 241

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 23/81 (28%), Positives = 33/81 (40%)
 Frame = +3

Query: 18  VVVVRCEQINISGNFFRNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKT 197
           V+VV  E++ +SG     KL      R              R P +I+   VRGM+P K 
Sbjct: 144 VIVVNAEKVAVSGKKRNQKLYRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KG 202

Query: 198 ERGKNALRRLRTYDGCPPPFD 260
             G+     L+ Y G   P +
Sbjct: 203 RLGRALFNHLKVYKGPDHPHE 223


>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1189

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = -2

Query: 184 IMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEM 47
           ++ L + H  LD  + W+G +    LH LR+ D+S S+ LK+LP++
Sbjct: 655 LIELNLTHSKLD--MLWEGVKP---LHNLRQMDLSYSVNLKELPDL 695


>At3g15590.1 68416.m01975 DNA-binding protein, putative similar to
           DNA-binding protein [Triticum aestivum] GI:6958202;
           contains Pfam profile: PF01535 PPR repeat
          Length = 610

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 24  VVRCEQINISGNFF-RNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGM 182
           V  C Q+ +  +   R K+  +  L +R N+ P+R  +HF   SK L   + GM
Sbjct: 277 VFACNQLLLLYSMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGM 330


>At3g11370.1 68416.m01382 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 589

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -3

Query: 528 NC-IHRIG*W**MVLSP---STPSHQHPW*SS*VSFHRQLS*QPCPSSCLQAYEQ 376
           NC  HRIG     +L P   +  SH+HP   S  SF  ++  Q C   C+Q+Y Q
Sbjct: 399 NCNSHRIGIDIRCILVPDHFTHESHEHPLFIS-TSFKAEIRCQGCQKECMQSYLQ 452


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 458  LGDPLKFLFIGNSLNSLALPLVFKLTNNITVFPSNFMGQSAYMTVITARFQTEDT*SSRH 279
            L  P  F F G  + +  +   F    N      NF+ ++   T +  ++Q + T SSRH
Sbjct: 1000 LNGPANFPFPGKQVPTSQVQADFPYFQNPQ--KDNFVDKNHQSTQLPEQYQGQSTWSSRH 1057

Query: 278  YNTSTV 261
            ++T+ V
Sbjct: 1058 FDTAHV 1063


>At4g03180.1 68417.m00435 expressed protein
          Length = 185

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 390 EDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 482
           +DKRKGK+ KR+  E   K+ T++  E+V K
Sbjct: 97  DDKRKGKSNKRIGVEDLYKQ-TREEMERVRK 126


>At1g01710.1 68414.m00089 acyl-CoA thioesterase family protein
           contains Pfam profiles: PF02551 acyl-CoA thioesterase,
           PF00027 cyclic nucleotide-binding domain
          Length = 427

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 PFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGC 245
           P   + PS  L K  + ++P +  +G   +R  +T+DGC
Sbjct: 14  PLLQKLPSSSLKKIAQVVVPKRYGKGDYVVREDQTWDGC 52


>At1g53110.1 68414.m06014 expressed protein
          Length = 439

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 381 RKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTI 506
           RKL +K   KAV RV  E + KR   D   K  KA    +++
Sbjct: 316 RKLHEKAAAKAVIRVKKEAEKKRKELDKRAKKKKAVCKSSSV 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,834
Number of Sequences: 28952
Number of extensions: 269399
Number of successful extensions: 812
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)