Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30945
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    37   0.49 
UniRef50_Q940X9 Cluster: AT5g21160/T10F18_190; n=3; core eudicot...    34   3.4  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 37.1 bits (82), Expect = 0.49
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -3

Query: 511  NGRQRLGSAPGIADAHGR 458
            +GRQRLGSAPGIA+ HGR
Sbjct: 968  SGRQRLGSAPGIAEVHGR 985


>UniRef50_Q940X9 Cluster: AT5g21160/T10F18_190; n=3; core
           eudicotyledons|Rep: AT5g21160/T10F18_190 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 826

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 516 SKTVGSG-LALPLALLMPTGDGNYSSGAPYTHPTEHCSEACHSERVNNFKSSNLL**FIK 340
           ++T+G G    P ++      GN S G+     ++  SE   S R NN+KS NL     +
Sbjct: 368 AETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSADE 427

Query: 339 KRNGCEDL 316
           KRN  EDL
Sbjct: 428 KRN-VEDL 434


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,864,326
Number of Sequences: 1657284
Number of extensions: 11909963
Number of successful extensions: 20734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20731
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)