Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30942
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.40 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.9  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 438 VRCSRTGRWR-MRSA--WTPFENQLKEARFP 521
           V+ S++  WR +R+   WTPF    K+ R+P
Sbjct: 445 VKSSKSSGWRKLRNIVHWTPFFQTYKKQRYP 475


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 480 WTPFENQLKEARFP 521
           WTPF    K+ R+P
Sbjct: 228 WTPFFQTYKKQRYP 241


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 480 WTPFENQLKEARFP 521
           WTPF    K+ R+P
Sbjct: 143 WTPFFQTYKKQRYP 156


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 401 RTAWRWRSRDAPRTSRGPPPAV 336
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 401 RTAWRWRSRDAPRTSRGPPPAV 336
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 401 RTAWRWRSRDAPRTSRGPPPAV 336
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 401 RTAWRWRSRDAPRTSRGPPPAV 336
           R  W+ RSRD     R   P +
Sbjct: 60  RETWKERSRDRTERERSREPKI 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,642
Number of Sequences: 438
Number of extensions: 2128
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)