Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30936
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 40 2e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 37 0.003
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 34 0.020
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.061
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 31 0.11
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.43
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.43
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.57
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.75
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.75
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 0.99
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 28 1.3
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 1.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 4.0
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.0
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 4.0
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.0
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 7.0
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 9.2
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 9.2
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 40.3 bits (90), Expect = 2e-04
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Frame = +2
Query: 17 RNQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXXKIVELEEE---LRVVG 187
R + EA AE A+ K EV +L++ E + ++ ELEEE LR+
Sbjct: 12 RAETDEAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKA 71
Query: 188 NNLKSLEVSEEKANQR----EEEYKNQIKTL---TTRLKXXXXXXXXXXXSVQKLQKEVD 346
+N + E+ +++ EEE + K L T +++ VQ L++E D
Sbjct: 72 DNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERD 131
Query: 347 RLEDELVAEKEKYKDIGDDLD 409
+E +L +KY + +LD
Sbjct: 132 DMEQKLEEMTDKYTKVKAELD 152
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/83 (24%), Positives = 39/83 (46%)
Frame = +2
Query: 161 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQKE 340
LE+E + + LKSLE ++ + EE ++ LT +LK + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 341 VDRLEDELVAEKEKYKDIGDDLD 409
+ L++E +++ + + LD
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLD 979
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 33.9 bits (74), Expect = 0.020
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +3
Query: 231 NAKRSTKIRSKPSPPV*RRLKHVPSS-PSVPCRNCKRRSIGLKTNLSPKRRNTRTSETIW 407
NAK + R SP L +PSS PS +N + I + S + N R++E ++
Sbjct: 186 NAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVY 245
Query: 408 IPPXXXXXXRNKLPLYKD---SKSECPGNT-ISPRF 503
PP + L L KD KS+C NT + P F
Sbjct: 246 -PPPSKDLLQKLLALEKDGQVEKSDCSKNTQLKPSF 280
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.3 bits (70), Expect = 0.061
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = +2
Query: 167 EELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQKEVD 346
+ELR + NL+ + +++ + E + +L RLK ++ Q+ +
Sbjct: 713 KELRSINQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRKRTQERLI 772
Query: 347 RLEDELVAEKEKYKDIGDDLDT 412
D+L+AE+E+ + DL T
Sbjct: 773 SENDKLLAERERLMSLVSDLQT 794
Score = 28.7 bits (61), Expect = 0.75
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +2
Query: 158 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQK 337
+L+E + N+L SL+ S EK+ EY ++IKTL + + Q ++
Sbjct: 823 KLKESNEKMSNDLHSLQKSLEKSGI---EYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEI 879
Query: 338 EVDRLEDELVAEKEKYKDI 394
++ L + EK+++ +
Sbjct: 880 KLQELNGVIELEKQRFSTL 898
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 149 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQK 328
+I ELE L +N K L E + + +I +L+T +K ++QK
Sbjct: 854 EIAELELSLVNEEHNRKKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQK 913
Query: 329 LQKEVDRLEDE 361
L E DRLE E
Sbjct: 914 LNHEFDRLERE 924
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.43
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +2
Query: 158 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTR----LKXXXXXXXXXXXSVQ 325
+L+E + + L+ + K+++ ++Y+ + L T ++ S+
Sbjct: 536 QLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESIS 595
Query: 326 KLQKEVDRLEDELVAEKEKYKDIGDDLD 409
++EV++L DE+ E+Y D + D
Sbjct: 596 LFKEEVEKLTDEITQLSERYNDKCHEFD 623
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.5 bits (63), Expect = 0.43
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Frame = +2
Query: 29 KEARFLAEEADKKYDE-VARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSL 205
K++R K+ DE + +L + ++ + E+E EL+ + K +
Sbjct: 378 KQSRTSQFTTKKERDEWIRNQLLQINRNINSTKENSDYLKTEYDEMENELKAKLSRKKEI 437
Query: 206 EVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQKEVDRLEDEL 364
E+S E R + I ++ R + KL+ ++ ++D+L
Sbjct: 438 EISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKSSIENVKDDL 490
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.57
Identities = 28/139 (20%), Positives = 59/139 (42%)
Frame = +2
Query: 44 LAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLKSLEVSEEK 223
+ +E D+ +E+ +++ E ++ K+ + EE V N + + +
Sbjct: 539 ITKEKDRLINELEQRIKSYEVNVSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDNDLRR 598
Query: 224 ANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQKEVDRLEDELVAEKEKYKDIGDD 403
++ + +++ K LT+ L+ + L++ V LE E + K+ D
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLV-------ISSLRETVAMLEKERESIKKYLSGNAKD 651
Query: 404 LDTAFVELILKE*ASVIQR 460
LD + IL + SV+QR
Sbjct: 652 LDNTNLMEILNDKISVLQR 670
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.75
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +2
Query: 158 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXXSVQKLQK 337
E +L V+ N+KS + ++ +E+K +++ L +L ++ ++
Sbjct: 483 EQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQL-------VNSSTELESVKS 535
Query: 338 EVDRLEDELVAEKEKYK 388
E ++L++ELV E EK K
Sbjct: 536 ENEKLKNELVLEIEKRK 552
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.7 bits (61), Expect = 0.75
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 300 PSSPSVPCRNCKRRSIGLKTNLSPKR 377
P+SP+VP + S+ TN+SP+R
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRR 163
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 0.99
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = -2
Query: 332 AVSAR--NARRTRHVLQPPSDGW 270
+V+AR N RR RHVL P +GW
Sbjct: 211 SVNARHDNLRRKRHVLVQPQEGW 233
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 149 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTL 268
+I +L EE + + ++ LE E+AN E+Y+ Q + L
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEAL 186
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.3
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -2
Query: 224 PSPLRLPEISGCYQRHGAPPQAQRFWIRRTRHAPRRAPSQPQPWPAYEQPHRISCRPP 51
PSP+ LP S Y + PP + P+ A P+ Q +IS PP
Sbjct: 402 PSPMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQTQQISSLPP 459
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 320 VQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 427
+QK +KE +LE++L + KY++ ++ + V+L
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQL 192
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/86 (19%), Positives = 40/86 (46%)
Frame = +2
Query: 20 NQLKEARFLAEEADKKYDEVARKLAMVEADLXXXXXXXXXXXXKIVELEEELRVVGNNLK 199
N+L+ + ++ +KK++E L + ++++ +E +L K
Sbjct: 677 NELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLE------K 730
Query: 200 SLEVSEEKANQREEEYKNQIKTLTTR 277
SL +SE ++ +E YK+ + L ++
Sbjct: 731 SLVLSERSKDELDESYKSLQEQLASK 756
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 317 SVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 439
+++ KEV ++ + +K+K D DD++ + E +L E
Sbjct: 69 TIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAE 109
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 4.0
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +3
Query: 201 LWKSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSV---PCRNCKRRSIGLKTNLSP 371
L+KS+ + K+ + S SP L H + + P +N +RR+ L+T L P
Sbjct: 322 LFKSEEEKDPVGKQKLPLESSLSP-----LDHSSAEKEMQKAPAKNKRRRTGSLETGLYP 376
Query: 372 KRRNT----RTSETIW 407
K T R+ +W
Sbjct: 377 KESPTPSKKRSKRVLW 392
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 4.0
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 457 LYNGSLFLEDELYEGGIQIVSDVLVFLLFGDKFVFKP--IDLLLQFLHGTLGELGTCFSL 284
LYN S ++ ++ S + V + +G +FVF+ ID L + LH L +G C L
Sbjct: 499 LYNISRGIDTDIINNETPRRS-ISVDVNWGVRFVFQEDGIDFLKRLLHELLSRMGKCQVL 557
Query: 283 L 281
L
Sbjct: 558 L 558
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 207 KSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSVPCRNCKRRSIGLKTNLSPKRRNT 386
KS K+S ++ KP V ++ P PS+ K S+ K+ PKR T
Sbjct: 106 KSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKS--KPKRAGT 163
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 576 HVCMDFHNLKVRNTKYKLESMF 511
+VC F + + RN+KYK +SMF
Sbjct: 344 NVCYGFDDAQTRNSKYK-DSMF 364
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 436 GISFRYTKTRSLSALATPSARDSIFKHRF*FIFCIPDF 549
G++F TRS+ P+ARD + HR +P F
Sbjct: 934 GVNFIDVATRSIIDQEVPAARDLMAVHRDYVCVKVPQF 971
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 404 DRLRCPCISPFRRQVRLQAYRPPFAVSARNARRTR-HVLQPPSD 276
D L P +P R Q P + RNA RTR H P S+
Sbjct: 148 DSLESPVSAPSRHQSTYSYKGGPLNYNLRNASRTRSHQTLPSSN 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,521
Number of Sequences: 5004
Number of extensions: 43782
Number of successful extensions: 194
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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