Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30929
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 34 0.023
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.023
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.16
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 30 0.28
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.28
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 30 0.37
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.64
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 29 0.85
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.1
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.5
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.0
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 2.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 2.6
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.5
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 6.0
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 6.0
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.0
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 6.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 6.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 7.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 33.9 bits (74), Expect = 0.023
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Frame = +1
Query: 343 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 519
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 520 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYHLEERQKRQDYDLKELKERQ 696
+ ++IK + EGLS+ KL K +E + I + LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 697 KQ 702
K+
Sbjct: 143 KR 144
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 337 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 516
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 517 KISL 528
K L
Sbjct: 196 KAML 199
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.16
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Frame = +1
Query: 331 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 507
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 508 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYHLEERQKRQDYDLKELK 687
E+ K + K E + + +KA+ E K E E+ E ++ + +E
Sbjct: 631 EKAKREAEEKAK-REAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKV 689
Query: 688 ERQKQ 702
+R+ +
Sbjct: 690 KRETE 694
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 331 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 507
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 508 EEKKISLSIRIKPLTIE 558
E K ++K T E
Sbjct: 679 ENAKREAEEKVKRETEE 695
Score = 29.5 bits (63), Expect = 0.49
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 331 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 507
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Query: 508 EEKK 519
E K
Sbjct: 695 ENAK 698
Score = 29.1 bits (62), Expect = 0.64
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = +1
Query: 340 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 513
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 514 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYHLEERQKRQDYDLKELKER 693
K + K E + + +KA+ E K E E+ E +++ + +E +R
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 694 QKQ 702
+ +
Sbjct: 668 EAE 670
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/106 (22%), Positives = 43/106 (40%)
Frame = +1
Query: 331 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 510
+ EEK +R E KR+A +A ++A + +K + + + K + ++
Sbjct: 652 EAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADK 711
Query: 511 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYHLEE 648
+I S PL +VD +Q E + K + EK E
Sbjct: 712 NPEIKSS---APLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/122 (19%), Positives = 55/122 (45%)
Frame = +1
Query: 334 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 513
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEE- 131
Query: 514 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYHLEERQKRQDYDLKELKER 693
LT+E + V +L ++ + L ++ +E++K++ DLKEL E+
Sbjct: 132 -----------LTVESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEK 180
Query: 694 QK 699
+
Sbjct: 181 SE 182
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 331 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 498
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 499 QLEEEKKISLSIRIKPLT 552
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/76 (26%), Positives = 44/76 (57%)
Frame = +1
Query: 472 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYHLEER 651
+L+R K ++Q E+EKK+ E ++ K+++ + KLE E+ L+E+
Sbjct: 97 RLKREKERQQREQEKKLREQ--------EKIAAKKMKE--------LEKLEKERIRLQEQ 140
Query: 652 QKRQDYDLKELKERQK 699
Q+R++ ++L+E+++
Sbjct: 141 QRRKEERDQKLREKEE 156
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.64
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Frame = +1
Query: 334 IEEKRQRLE--EAEKKRQAMLQAMKD--ASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 501
+EE R+ + A Q +LQA ++ A + + + EN +L++ + KE+
Sbjct: 537 MEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEK 596
Query: 502 LEEEKKISLSIRIKPLTIEGLSVDKL-RQKAQELWECIVKLETEKYHLEERQKRQDYDLK 678
++KK L + K + ++L Q AQ+ E + E K E+R KR+ +
Sbjct: 597 KRDKKK-QLKLA-KEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQ 654
Query: 679 ELKERQKQ 702
+ ERQK+
Sbjct: 655 QELERQKR 662
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 28.7 bits (61), Expect = 0.85
Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 475 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEK--- 633
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 634 -YHLEERQKRQDYDLKELKERQ 696
H+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 355 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 516
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 334 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 513
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 514 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 612
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 594 GTLGVHRQTRDREIPSRREAKETGLRLKRAQRK 692
GTLG +Q +RE S R+ K L K A+R+
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRR 114
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 343 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 513
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 101 SGSPSPAIDGLLSCLGAGF 45
S SPSP IDG + +G GF
Sbjct: 80 SSSPSPKIDGTAASIGMGF 98
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 55 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 162
PK Q RP I+ + E K D+K++ +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 421 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 564
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 607 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 485
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 601 WECIVKLETEKYHLEERQKRQDYDLKELK 687
W C+ E +++E Q +DYD LK
Sbjct: 14 WRCLGSEGNELIYIDEEQTWKDYDPNSLK 42
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 334 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 513
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 514 KKISLSIRI 540
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 337 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 510
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 511 EKKI 522
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 433 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 609
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 610 IVKLETEKYHLEERQKRQDYDLKELKERQKQ 702
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 448 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 624
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 625 TE 630
+
Sbjct: 425 KD 426
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 449 SLFFWMVKLGPVLLASFMAWSIAW 378
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 7.9
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 367 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 546
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 547 LTIEGLSVDKLRQKAQELWECIVKLE 624
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 7.9
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 367 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 546
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 547 LTIEGLSVDKLRQKAQELWECIVKLE 624
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 478 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQ-ELWE 606
E N +EQ++E+KK+S S + +++ L D L +K + E++E
Sbjct: 491 ELNNLREQIKEQKKVSESTQ---SSLQSLQRDILNEKKKHEVYE 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.125 0.331
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,169
Number of Sequences: 5004
Number of extensions: 30822
Number of successful extensions: 166
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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