Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30928
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)              31   1.4  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   1.4  
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     29   3.2  
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   4.2  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   4.2  
SB_42883| Best HMM Match : PT (HMM E-Value=0.21)                       29   5.5  
SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)            29   5.5  
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 29   5.5  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   7.3  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   7.3  

>SB_34469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 ATTTCTRPRTRFSLKKPARSRTLAPKTKASR--SRDSTNTLAPDGVTYRVDYTADENGFV 698
           +TTT T   T++ + K    +TLAP T A        T T  P   T    ++A+ +GF+
Sbjct: 235 STTTDTNTNTQWFIDKVMSEKTLAPHTAAEYRIMLTRTRTTVPYTATIIAHFSAELDGFL 294

Query: 699 ADG 707
             G
Sbjct: 295 RWG 297


>SB_2867| Best HMM Match : Aerolysin (HMM E-Value=5.3e-06)
          Length = 472

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 ATTTCTRPRTRFSLKKPARSRTLAPKTKASR--SRDSTNTLAPDGVTYRVDYTADENGFV 698
           +TTT T   T++ + K    +TLAP T A        T T  P   T    ++A+ +GF+
Sbjct: 263 STTTDTNTNTQWFIDKVMSEKTLAPHTAAEYRIMLTRTRTTVPYTATIIAHFSAELDGFL 322

Query: 699 ADG 707
             G
Sbjct: 323 RWG 325


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 82  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 192
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 519 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 647
           PK T   TRP+TR   +   R +T  PKTK S+S+  T T  P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 413 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 592
           + ++ P  V +K   P G   DY Y +   D  +A   YH L   E          +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240

Query: 593 G 595
           G
Sbjct: 241 G 241


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 439 NVCGCDHLAGNVCGCDWHGNGRL 371
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_42883| Best HMM Match : PT (HMM E-Value=0.21)
          Length = 134

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 534 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPDGVTYR 665
           T ++P  + S ++P R  T  P  + SR R S  T  PD  T R
Sbjct: 19  TTSQPNNQ-SARQPVRLTTSQPDNQLSRKRASQTTSYPDNETAR 61


>SB_1560| Best HMM Match : Glyco_hydro_67C (HMM E-Value=8.4)
          Length = 296

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +3

Query: 525 ATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNT--LAPDGVTYRVDYTADENGFV 698
           +TTT T   T++ + K    +TLAP T A      T T    P   T    ++A+ +GF+
Sbjct: 87  STTTDTNTNTQWFIDKVMSEKTLAPYTAAEYRIMLTRTRITVPYTATIIAHFSAELDGFL 146

Query: 699 ADG 707
             G
Sbjct: 147 RWG 149


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 536 LYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPGRCHLQ 664
           +Y T + +     G++E +G  ++ +K++GF   +G    HLQ
Sbjct: 401 IYRTGDLVRWTPDGEIEYLGRIDDQVKIRGFRVEIGSIETHLQ 443


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 350
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 448 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 320
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 261 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 350
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -3

Query: 433 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 353
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,581,302
Number of Sequences: 59808
Number of extensions: 363686
Number of successful extensions: 1117
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)