Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30927
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 632 DISSYGCIYVIITAIV*VDYVNIMCSRNTTLR 727
           D+SSY C+ + +   V   +V I C    T R
Sbjct: 690 DLSSYNCVPINVQFSVLYGFVIIECQEPVTNR 721


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 735 WPRRNVVFREHIIFT*STHTIAV 667
           W RRNV+ ++H+ F   T ++ +
Sbjct: 183 WMRRNVLNKQHVHFHDYTGSVVI 205


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 710 RNTTLRRGHRLDPKHIIDLYNFYSSSNT 793
           RN  LRR   +D ++    YN + SS++
Sbjct: 71  RNILLRRTDSMDSQNSASTYNSFLSSDS 98


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 600 RIASFCCPGRER 565
           RI   CCPGR R
Sbjct: 403 RILCACCPGRVR 414


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,554
Number of Sequences: 438
Number of extensions: 4277
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)