Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30925
         (803 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         30   0.025
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   3.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   8.7  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 29.9 bits (64), Expect = 0.025
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 593 NQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEP--TGP 766
           N G+  Y  N  S  P Q  Y Q+ G +NQ++   QP  G   +     Y  P    T P
Sbjct: 186 NTGKTQYNLNSKSL-PRQ--YSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEP 242

Query: 767 PR 772
           PR
Sbjct: 243 PR 244


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 750 PNQPVHHGASSTVSPTQ 800
           P+  +HHGA+   SP Q
Sbjct: 25  PHYNIHHGATPPQSPNQ 41


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 711 DSPESL*MKNTKSPN 755
           DSP S+ M NT +PN
Sbjct: 111 DSPSSMHMANTAAPN 125


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 711 DSPESL*MKNTKSPN 755
           DSP S+ M NT +PN
Sbjct: 113 DSPSSMHMANTAAPN 127


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 122 RLVRGIGTHRILLQRSPQYSRFPFRSSSSV 33
           R V     + ILL+   ++  FPFR ++ +
Sbjct: 189 RAVIDFDNNEILLRNGEKHHSFPFRKTTEI 218


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 100 VPIPRTRRSRCICLRIPDSRI 162
           V + R++ S  +CL IP+S +
Sbjct: 109 VLVHRSQNSNDVCLAIPESLV 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,230
Number of Sequences: 336
Number of extensions: 4167
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21895259
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)