Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30925
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 45 1e-05
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 33 0.063
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.11
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 31 0.19
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 31 0.19
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.8
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.8
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 3.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.1
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 4.1
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 4.1
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 26 5.5
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces... 26 7.2
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 7.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.2
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 7.2
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 7.2
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 9.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.5
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 9.5
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 9.5
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.5
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 9.5
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 1/117 (0%)
Frame = +2
Query: 452 YKALPSD-YYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG 628
YK + S Y P +S S Y + +Y+P+ SY+ Y
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Query: 629 SYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
SY P SY SY+ SY P + P + Y P+ P YS T P
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 44.4 bits (100), Expect = 2e-05
Identities = 32/116 (27%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Frame = +2
Query: 461 LPSDYYQPQA---SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS 631
L S Y P + S A + + P+ P + SY P SY+ Y S
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPS 1612
Query: 632 YGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
Y P SY SY+ SY P + P + Y P+ P YS T P
Sbjct: 1613 YSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 42.3 bits (95), Expect = 8e-05
Identities = 30/111 (27%), Positives = 39/111 (35%)
Frame = +2
Query: 467 SDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ 646
S Y P + A+ P+ P + SY P SY+ Y SY P
Sbjct: 1596 SPSYSPTSPSYSAT---SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Query: 647 GSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
SY SY+ SY P + P + Y P+ P YS T P
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/93 (27%), Positives = 33/93 (35%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P SY+ Y SY P SY SY+ SY
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P + P + Y P+ P YS T P
Sbjct: 1706 PTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P SY+ Y SY P SY SY+ SY
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 701 P 703
P
Sbjct: 1741 P 1741
Score = 35.5 bits (78), Expect = 0.009
Identities = 18/61 (29%), Positives = 22/61 (36%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P SY+ Y SY P SY SY+ SY
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 701 P 703
P
Sbjct: 1748 P 1748
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGS 694
P+ P + SY P SY+ Y SY P SY SY+ S
Sbjct: 1695 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.063
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +2
Query: 431 KDYYQQTYKALPSDYY-QPQASEQQASVVAP--PNSQPREGKAYQSQGSYVPNQGSY--N 595
+D Y + S+Y QP + QA+ +AP PN + + QS G +P + ++
Sbjct: 455 QDPYSMSNGVYGSNYSAQPSTMQMQATGIAPPQPNMSMQMPMSMQSTGYQMPMENTWVDY 514
Query: 596 QGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKY 742
G G + N + D + + G YQ G G P + Y
Sbjct: 515 NGMSQQGNGMQPATMNYSNSMGYDTNVPADNGYYQQGYGNVMMPPDASY 563
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +2
Query: 632 YGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGF 778
YG SY +Y N GSY P Q T +PL + Y P+ PP G+
Sbjct: 98 YGYYPQSYANQSYTYGNNFGSYPPTQPST-QPLPQSY--GYPSYPPAGY 143
Score = 29.1 bits (62), Expect = 0.77
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 599 GQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQP 703
G YG SY +YG N GSY Q S QP
Sbjct: 94 GPSRYGYYPQSYANQSYTYGNNFGSYPPTQPSTQP 128
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/55 (38%), Positives = 23/55 (41%)
Frame = +2
Query: 557 SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
S+ Y P SY YG N GSY P Q S SY SY P G+ G
Sbjct: 96 SRYGYYPQ--SYANQSYTYGNNFGSYPPTQPSTQPLPQSY--GYPSYPPA-GYRG 145
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +2
Query: 482 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQ 619
P AS+ +A AP P+ G Y Q Y PNQ +Y Q Y Q
Sbjct: 88 PAASQNRAYGAAPQPYPPQGG--YPQQPYYYPNQPNYYPAQPAYAQ 131
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.1 bits (67), Expect = 0.19
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 416 LKALPKDYYQQTYKALPS--DYYQPQASEQQASVVAPPNSQPRE---GKAYQSQGSYVPN 580
L ALP+D TY+A PS D S SV +PP S+ RE G YQ +P+
Sbjct: 32 LPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESR-REGGMGSGYQRDAIPIPS 90
Query: 581 QGSYNQGQGDYGQNL 625
+ + G+ +L
Sbjct: 91 EPPFTAHVGNLSFDL 105
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 63 RILRTTLKKYTMRPNTTDKTV*VHMPTDTRLPNLRRSKIASDPETS 200
R++ + +K+++ P T DKT +P D + N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 443 QQTYKALP--SDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGD 610
QQ LP S+YY P A+ + A V PP + + + + N GS +Q D
Sbjct: 207 QQPNPQLPGVSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMTASANAGSISQAGPD 264
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 656 GQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTG 763
G NDG +N G G P Y EP P G
Sbjct: 838 GGNDGGGTENHRDSTVGGGILKNPKAYPYREPTPPG 873
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 428 PKDYYQQTYK-ALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 604
P YY T K ++PS Q Q+ASV+ N+ + ++ S Y Q + +
Sbjct: 265 PNQYYASTSKQSIPSQSQNLQ-PPQKASVLGTVNNYRQYQNSFISLNDYQAAQSNISSPS 323
Query: 605 GDYGQNLGSYGPNQGSYGQNDGSYNQN 685
+ P G+Y + + SY+Q+
Sbjct: 324 SRFPTPYSPSVP-FGTYQEKEKSYSQD 349
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -1
Query: 680 DYSCHRFDRNCLDLARSCLDFGHNRLGPDYSC 585
D+ CH +D N D G+ GP Y C
Sbjct: 68 DHYCHSYDHNSDDTPLGKSKVGYLSPGPGYEC 99
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 458 ALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 637
++ SDY +P Q S V P+S + Y+S +PN Q Q + S
Sbjct: 241 SISSDYIKPVDKSDQTSNVPSPSSSVGSLRLYRSPS--IPNDVEQPQPQSSRSRPRSSTI 298
Query: 638 PNQ 646
P Q
Sbjct: 299 PTQ 301
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 138 PTDTRLPNLRRSKIASDPETSPARISTRTAKMISSRYVTGQTE 266
P + LP+ S I+ D ETS A + + + +S VT + E
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVTTKPE 315
>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -2
Query: 397 LLCSSGSSFLPCFFMSYTSSPHIWSLFYWFQLDL 296
+L +G+ F+P + +T H+ +++ W L L
Sbjct: 190 ILLGAGTVFVPLMWCYFTHDLHLVTMYIWITLRL 223
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 425 LPKDYYQQTYKALPSDYYQPQAS 493
+PK Y + Y +PS Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 98 HRILLQRSPQYSRFPFRSSSSVQEWGLL 15
HR+++Q +P Y R V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 115 TRRSRCICLRIPDSRICEGRKSRQIRR 195
TRRS L+IPDS IC R+ R
Sbjct: 461 TRRSSFSTLKIPDSDICFTRRRSDSNR 487
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +2
Query: 23 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 202
PT+ + K + Y + Y+ ++ +D + Y + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392
Query: 203 GSYIYKDGKNDLIKVRYWSD 262
+ I G DL K+ + D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 19 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 138
R + WT + KG Y L+ + + P TRR R C
Sbjct: 59 RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND 667
G+ V +GSYN QG+ + + G+YG ++
Sbjct: 311 GNVVATKGSYNTFQGEAESAINNLNELLGTYGYSN 345
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 623 LGSYGPNQGSYGQNDGSYNQN 685
LGS G N + N G+YN N
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNN 577
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 56 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 169
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 91 IRC-VPIPRTRRSRCIC-LRIPDSRICE 168
IRC +PIPRTR SR + DSR E
Sbjct: 34 IRCDIPIPRTRTSRPFAFVEYEDSRDAE 61
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 656 RNCLDLARSCLDFGHNRLGPDYSCLGLERSCLGSD 552
RN D LD +R+ PD + L L +GSD
Sbjct: 228 RNMYDFFMCLLDSRASRMTPDQALLTLHADYIGSD 262
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 502 LLFGCLWLVIITWKGFVGLLVI 437
LLFGCL +V + F+GL +
Sbjct: 49 LLFGCLTIVFSAFASFLGLYFV 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,409
Number of Sequences: 5004
Number of extensions: 65764
Number of successful extensions: 280
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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