Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30925
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 46 4e-05
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 41 8e-04
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 41 0.001
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.010
At1g44085.1 68414.m05090 glycine-rich protein similar to glycine... 38 0.010
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.018
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 37 0.018
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 36 0.024
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.024
At3g07560.1 68416.m00903 glycine-rich protein 36 0.024
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 36 0.031
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK... 36 0.042
At2g05440.2 68415.m00575 glycine-rich protein 36 0.042
At1g52000.1 68414.m05866 jacalin lectin family protein similar t... 36 0.042
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 36 0.042
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 34 0.096
At3g29033.1 68416.m03629 glycine-rich protein 34 0.13
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 34 0.13
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 33 0.17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.17
At2g05440.1 68415.m00574 glycine-rich protein 33 0.17
At2g25970.1 68415.m03117 KH domain-containing protein 33 0.22
At4g24680.1 68417.m03533 expressed protein 33 0.29
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.29
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 32 0.51
At3g03680.1 68416.m00371 C2 domain-containing protein contains I... 31 0.68
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 31 0.68
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.90
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.90
At2g05540.1 68415.m00586 glycine-rich protein 31 0.90
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR... 31 1.2
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 31 1.2
At4g20020.2 68417.m02930 expressed protein 31 1.2
At4g20020.1 68417.m02931 expressed protein 31 1.2
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 1.2
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 1.6
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 1.6
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 30 1.6
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 30 1.6
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 30 1.6
At1g55170.1 68414.m06301 expressed protein 30 1.6
At5g61660.1 68418.m07736 glycine-rich protein 30 2.1
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 2.1
At1g29380.1 68414.m03592 hypothetical protein 30 2.1
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 29 2.7
At3g63180.1 68416.m07097 expressed protein 29 2.7
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.7
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 29 2.7
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 2.7
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 2.7
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 29 3.6
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 29 3.6
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 29 3.6
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 29 4.8
At3g50370.1 68416.m05508 expressed protein 29 4.8
At2g05530.1 68415.m00585 glycine-rich protein 29 4.8
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 28 6.3
At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical... 28 6.3
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 28 6.3
At4g28700.1 68417.m04101 ammonium transporter, putative similar ... 28 6.3
At1g61070.1 68414.m06876 plant defensin-fusion protein, putative... 28 6.3
At1g49270.1 68414.m05524 protein kinase family protein contains ... 28 6.3
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 8.3
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 8.3
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 28 8.3
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si... 28 8.3
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical... 28 8.3
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 28 8.3
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 28 8.3
At1g71680.1 68414.m08271 lysine and histidine specific transport... 28 8.3
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 28 8.3
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 28 8.3
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 28 8.3
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 45.6 bits (103), Expect = 4e-05
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 21/117 (17%)
Frame = +2
Query: 440 YQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQS---QGSYVPN-QGSYNQ-GQ 604
Y Q A Y+Q Q ++ +P N Y QG+ V Q YNQ GQ
Sbjct: 358 YNQGQGAQTPPYHQGQGAQTPPYQESPNNYGQGAFVQYNQGPPQGNVVQTTQEKYNQMGQ 417
Query: 605 GDYG-QNLGSYGPNQGS------YGQNDG---------SYNQNQGSYQPGQGFTGKP 727
G+Y Q+ G+Y P QG+ YGQ G +YNQ QG+ PGQG G+P
Sbjct: 418 GNYAPQSGGNYSPAQGAGSPRFGYGQGQGGQLLSPYRGNYNQGQGTPLPGQGQEGQP 474
Score = 35.9 bits (79), Expect = 0.031
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 554 QSQGSYVPN-QGSYNQGQ-GDYGQNLGSYGPNQGSYGQNDGSYN-QNQGSYQPGQGFTGK 724
Q+ G+ P G+YNQ G YGQ S NQ + N +YN QN G+Y P G G
Sbjct: 620 QAHGAQAPPYHGNYNQATPGGYGQGT-SANFNQ-RFPVNPANYNMQNGGNYGPPHGLAGN 677
Query: 725 P 727
P
Sbjct: 678 P 678
Score = 34.7 bits (76), Expect = 0.073
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Frame = +2
Query: 440 YQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQ 619
++Q+ LP Q Q S++ S N + R+ QG +Q +QG GQ
Sbjct: 288 FKQSQGTLPVRKGQTQISDEIPSFQG--NVKQRQEMPIHGQGQAQRSQMPSSQGTLRQGQ 345
Query: 620 NLGSYGP-NQGSYGQNDGS----YNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRG 775
GS P NQ Y Q G+ Y+Q QG+ P + + GPP+G
Sbjct: 346 AQGSQRPSNQVGYNQGQGAQTPPYHQGQGAQTPPYQESPNNYGQGAFVQYNQGPPQG 402
Score = 31.1 bits (67), Expect = 0.90
Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +2
Query: 443 QQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYV--PNQGSYNQGQGDYG 616
Q+ Y + Y PQ+ + A PR G Q QG + P +G+YNQGQG
Sbjct: 409 QEKYNQMGQGNYAPQSGGNYSP--AQGAGSPRFGYG-QGQGGQLLSPYRGNYNQGQGTPL 465
Query: 617 QNLGSYGPNQGSYGQNDGSYNQNQGS-YQPGQGFTGKPLNEKYEEPEPTGPPRGFF 781
G G Q SY ++Q G+ P Q G + GPP+G F
Sbjct: 466 PGQGQEG--QPSYQM---GFSQGLGAPVPPNQVIPGNYGQWAFVNYN-QGPPQGNF 515
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/82 (26%), Positives = 29/82 (35%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P +Y+ Y SY P SYG SYN Y
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYS 1735
Query: 701 PGQGFTGKPLNEKYEEPEPTGP 766
P ++ P N + P P
Sbjct: 1736 PSIAYS--PSNARLSPASPYSP 1755
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/93 (26%), Positives = 31/93 (33%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P P + SY P SY+ Y SY P SY SY+ +Y
Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1644
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P P + Y P+ P YS T P
Sbjct: 1645 PTSP-AYSPTSPAYSPTSPSYSPTSPSYSPTSP 1676
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/98 (27%), Positives = 36/98 (36%)
Frame = +2
Query: 506 SVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQN 685
S +P S G + S G Y P +Y+ Y +Y P SY SY+
Sbjct: 1553 SPTSPGYSPTSPGYSPTSPG-YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1611
Query: 686 QGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
SY P + P + Y P+ P YS T P
Sbjct: 1612 SPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPAYSPTSP 1648
Score = 38.3 bits (85), Expect = 0.006
Identities = 25/93 (26%), Positives = 30/93 (32%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P P S Y P +Y+ Y SY P SY SY+ SY
Sbjct: 1571 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1630
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P + P + Y P P YS T P
Sbjct: 1631 PTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSP 1662
Score = 37.5 bits (83), Expect = 0.010
Identities = 24/93 (25%), Positives = 32/93 (34%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P +Y+ Y +Y P SY SY+ SY
Sbjct: 1620 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P + P + Y P P YS T P
Sbjct: 1680 PTSP-SYSPTSPSYSPTSPAYSPTSPGYSPTSP 1711
Score = 36.7 bits (81), Expect = 0.018
Identities = 24/93 (25%), Positives = 31/93 (33%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P P + +Y P+ Y+ Y SY P SY SY+ SY
Sbjct: 1564 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1623
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P + P + Y P P YS T P
Sbjct: 1624 PTSP-SYSPTSPSYSPTSPAYSPTSPAYSPTSP 1655
Score = 35.9 bits (79), Expect = 0.031
Identities = 23/93 (24%), Positives = 31/93 (33%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + +Y P +Y+ Y SY P SY SY+ SY
Sbjct: 1634 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
P P + Y P+ P Y T P
Sbjct: 1694 PTSP-AYSPTSPGYSPTSPSYSPTSPSYGPTSP 1725
Score = 34.7 bits (76), Expect = 0.073
Identities = 23/108 (21%), Positives = 34/108 (31%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY 655
+ P S + P P + Y P Y+ Y +Y P+ Y
Sbjct: 1528 FSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1587
Query: 656 GQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
+Y+ SY P + P + Y P+ P YS T P
Sbjct: 1588 SPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/61 (27%), Positives = 20/61 (32%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P+ P + SY P SY+ Y Y P SY SY SY
Sbjct: 1669 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYN 1728
Query: 701 P 703
P
Sbjct: 1729 P 1729
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +2
Query: 467 SDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ 646
S Y PQ+++ S+ P S R A Y P +Y+ Y SY P+
Sbjct: 1724 SPSYNPQSAKYSPSIAYSP-SNARLSPA----SPYSPTSPNYSPTSPSYSPTSPSYSPSS 1778
Query: 647 GSYGQNDGSYNQNQGSYQPGQGFT 718
+Y + + Y P G++
Sbjct: 1779 PTYSPSSPYSSGASPDYSPSAGYS 1802
Score = 27.9 bits (59), Expect = 8.3
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 11/103 (10%)
Frame = +2
Query: 437 YYQQTYKALPSDYYQPQ-ASEQQASVVAP--PNSQPREGKAYQSQGSYVPNQGSYNQGQG 607
Y Q+ K PS Y P A AS +P PN P + SY P+ +Y+
Sbjct: 1727 YNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP 1786
Query: 608 -------DYGQNLGSYGPNQGSYGQND-GSYNQNQGSYQPGQG 712
DY + G Y P Y + G Y ++G + G
Sbjct: 1787 YSSGASPDYSPSAG-YSPTLPGYSPSSTGQYTPHEGDKKDKTG 1828
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = +2
Query: 491 SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 670
SE + +V G Y + G Y G+Y G G+Y G+Y G Y G
Sbjct: 31 SESKETVKPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGGGG 90
Query: 671 SYNQNQGSYQPGQGFTG 721
Y G YQ G G G
Sbjct: 91 RYQGGGGRYQGGGGRQG 107
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/62 (35%), Positives = 30/62 (48%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
G+ ++ +GS+ +G Y G G YG G YG G YG G Y G G G+ G
Sbjct: 571 GRDFRREGSFGSGRGGYGGGGGGYGGG-GGYG-GGGGYG-GGGGYGGGYGGASSG-GYGG 626
Query: 722 KP 727
+P
Sbjct: 627 EP 628
>At1g44085.1 68414.m05090 glycine-rich protein similar to
glycine-rich protein GI:18147 from [Chenopodium rubrum]
Length = 90
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = +2
Query: 560 QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
QG+ + G N G Y N SY N G Y Q + + N N G Y P QG G
Sbjct: 17 QGNPADSGGIGNVNSGGYQVNQNSY-KNSGGYYQGNQATNGNSGGYSPYQGTQG 69
Score = 35.1 bits (77), Expect = 0.055
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +2
Query: 539 EGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFT 718
+G S G N G Y Q Y + G Y NQ + G N G Y+ QG+ G G
Sbjct: 17 QGNPADSGGIGNVNSGGYQVNQNSYKNSGGYYQGNQATNG-NSGGYSPYQGTQGLGVGGG 75
Query: 719 GKPLNE 736
G+ +E
Sbjct: 76 GQRYSE 81
Score = 34.3 bits (75), Expect = 0.096
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 551 YQ-SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGF 715
YQ +Q SY N G Y QG N G Y P QG+ G G Q GF
Sbjct: 34 YQVNQNSY-KNSGGYYQGNQATNGNSGGYSPYQGTQGLGVGGGGQRYSEILSNNGF 88
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +2
Query: 524 NSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 670
NS G YQ + N G Y+ QG G +G G N+G
Sbjct: 39 NSYKNSGGYYQGNQATNGNSGGYSPYQGTQGLGVGGGGQRYSEILSNNG 87
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 36.7 bits (81), Expect = 0.018
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND-GSYNQNQGSYQPGQGFT 718
G Y G G Y G G YG + G YG G YG N G Y N G G
Sbjct: 127 GGGYGGGGGGYGGSGGYGGGAGGYGGS-GGYGGGAGGYGGNSGGGYGGNAAGGYGGSGAG 185
Query: 719 G 721
G
Sbjct: 186 G 186
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGS-YGQNDGSYNQNQGSYQPGQGFT 718
G Y G Y G Y G G YG G YG N G YG N G+ G T
Sbjct: 134 GGGYGGSGGYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDAT 192
Query: 719 G 721
G
Sbjct: 193 G 193
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 36.7 bits (81), Expect = 0.018
Identities = 23/66 (34%), Positives = 27/66 (40%)
Frame = +2
Query: 524 NSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQP 703
N G + +G P G Y G YG G YG G YG N SY+ N G
Sbjct: 107 NYATERGSGFGGRGFGGPG-GGYGASDGGYGAPAGGYGGGAGGYGGN-SSYSGNAGG--- 161
Query: 704 GQGFTG 721
G G+ G
Sbjct: 162 GGGYGG 167
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +2
Query: 557 SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ---GSYGQNDGSYNQNQGSYQPGQGFTG 721
S G Y G Y G G YG N SY N G YG N SY N G Y ++G
Sbjct: 131 SDGGYGAPAGGYGGGAGGYGGN-SSYSGNAGGGGGYGGN-SSYGGNAGGYGGNPPYSG 186
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Frame = +2
Query: 515 APPNSQPREGKAYQSQGSYVPNQGSYNQ--GQGDYGQNLGSYG---PNQGSYGQNDGSYN 679
AP Y SY N G G YG N G YG P G+ G Y
Sbjct: 137 APAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYGGNPPYSGNAVGGGGGYG 196
Query: 680 QNQGSYQPGQGFTG 721
N G G G G
Sbjct: 197 SNFGG-GGGYGVAG 209
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 36.3 bits (80), Expect = 0.024
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 578 NQGSYNQGQGD-YGQNLGS-YGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
N+G Y+ G G YG G YG GSYG+ G Y GSY G G +G
Sbjct: 307 NRGGYSMGGGGGYGGGPGDMYG---GSYGEPGGGYGGPSGSYGGGYGSSG 353
Score = 32.3 bits (70), Expect = 0.39
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY-GQNDGSYNQNQGSY--QPGQGFTGK 724
G Y G Y G G G G YG G + G G Y G Y +P G++G+
Sbjct: 242 GGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGR 298
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +2
Query: 584 GSYNQGQGDYGQNLGSYGPNQGSY---GQNDGSYNQNQGSYQPGQGF 715
GSY + G YG GSYG GS G G G Y+ G G+
Sbjct: 329 GSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGY 375
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPN-----QGSYGQNDGSYNQNQGSYQPGQGFTGKP 727
G Y G Y G G YG +G Y G YG G YN+ S G G+ G P
Sbjct: 266 GGYGGEFGGY--GGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGP 323
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 512 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 637
V P N +P +AY G Y G Y G G YG G YG
Sbjct: 108 VNPANDRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYG 149
>At3g07560.1 68416.m00903 glycine-rich protein
Length = 304
Score = 36.3 bits (80), Expect = 0.024
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 455 KALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQ--GSYVPNQG-SYNQGQGDYGQNL 625
+ +P +P + S+ P ++P E + Y S G Y N G + G G YG L
Sbjct: 48 EVVPPPVNRPNTAANMNSLSRPVPARPWEQQNYGSTMGGGYGSNLGMTSGYGSGTYGSAL 107
Query: 626 GSYGPNQGSYGQNDGSYNQNQGSYQPG 706
G YG + G G GS + +G Y G
Sbjct: 108 GGYGSSYGG-GMYGGS-SMYRGGYGGG 132
Score = 31.1 bits (67), Expect = 0.90
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +2
Query: 581 QGSYNQGQGDYGQNLGSYGPN-QGSYGQNDGSYNQNQGS---YQPGQGFTGKPLNEKYEE 748
+G Y G G YG + G YG G YG G Y G+ G G G ++ +
Sbjct: 126 RGGYGGG-GLYGSS-GMYGGGAMGGYGGTMGGYGMGMGTGMGMGMGMGMGGPYGSQDPND 183
Query: 749 P--EPTGPPRGFFYSF 790
P +P PP GF+ SF
Sbjct: 184 PFNQPPSPP-GFWISF 198
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 35.9 bits (79), Expect = 0.031
Identities = 22/72 (30%), Positives = 26/72 (36%)
Frame = +2
Query: 482 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQ 661
P+ S + ++ PP S P Q QG Y Y Q YG YG Q YG
Sbjct: 144 PRRSPDASPIITPPVSHP---PLRQPQGGYGVPPAGYGVHQAGYGVPQAGYGIPQAGYGV 200
Query: 662 NDGSYNQNQGSY 697
Y Q Y
Sbjct: 201 PQAGYGIPQVGY 212
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Frame = +2
Query: 434 DYYQQTYKALPSDY--YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQG 607
D +QQ + Y Y E + S V P P S+ P Q QG
Sbjct: 113 DSWQQAFGGPEGKYPQYYWAYDELRRSGVEFPRRSPDASPIITPPVSHPP----LRQPQG 168
Query: 608 DYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKP 727
YG YG +Q YG Y Q Y Q G P
Sbjct: 169 GYGVPPAGYGVHQAGYGVPQAGYGIPQAGYGVPQAGYGIP 208
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +2
Query: 482 PQASEQQASVVAP--PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY 655
PQ + S VAP QP++ +A Q + +Q Q + Q Y Q
Sbjct: 469 PQPQPRFDSYVAPWAQQQQPQQPQAQQGYSQHQQHQQQQGYSQPQHSQQQQGYSQLQQPQ 528
Query: 656 GQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEP 757
Q Y+Q+Q Q + +P N YE P P
Sbjct: 529 PQQ--GYSQSQPQAQVQMQPSTRPQN-PYEYPPP 559
>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 513
Score = 35.5 bits (78), Expect = 0.042
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Frame = +2
Query: 518 PPNSQPREGKAYQSQGSYVPNQGSYN-QGQG-DYGQN----LGSYGPNQGSYGQNDGSYN 679
PP+ G QS+G Y + G+Y QG+G YG G YG +Y Q G Y
Sbjct: 432 PPSGNQTGGYNNQSRGGY--SSGAYPPQGRGAPYGAGPRGPSGGYGVGPPNYSQGGGQYG 489
Query: 680 QNQGSYQPGQGFTGKPLNEKY 742
+ GS + GQ G N++Y
Sbjct: 490 GSGGSGR-GQNPMGGARNQQY 509
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 35.5 bits (78), Expect = 0.042
Identities = 24/68 (35%), Positives = 25/68 (36%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKY 742
G Y G Y G G YG G YG G +G G Y G Y G G G
Sbjct: 87 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG-GGGHYGGGGGGYGGGGGHHGGG-GHGL 144
Query: 743 EEPEPTGP 766
EP T P
Sbjct: 145 NEPVQTKP 152
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +2
Query: 590 YNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
Y G G YG G YG G YG G Y G Y G G G
Sbjct: 75 YGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG 118
Score = 34.7 bits (76), Expect = 0.073
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 584 GSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
G Y G G YG G YG G YG G Y G + G + G
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHGGGGHYGG 125
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/53 (37%), Positives = 21/53 (39%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
G Y G Y G G YG G YG G YG G + G Y G G G
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG-GGGHYGGGGGGYG 131
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +2
Query: 578 NQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
+ G G YG G YG G YG G Y G Y G G G
Sbjct: 64 HNGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYG 111
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 488 ASEQQASVVAPPNSQPREGKAYQS-QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 664
++ +Q+ +V P + + + + Y G + + G G G G N G G YG
Sbjct: 22 SAARQSGMVKPESEETVQPEGYGGGHGGHGGHGGGGGHGHG--GHN-GGGGHGLDGYGGG 78
Query: 665 DGSYNQNQGSYQPGQGFTG 721
G Y G Y G G G
Sbjct: 79 GGHYGGGGGHYGGGGGHYG 97
>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
myrosinase binding protein [Brassica napus] GI:1711296,
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 730
Score = 35.5 bits (78), Expect = 0.042
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +2
Query: 503 ASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQ 682
AS V ++ G + S GS N G+ G G+ +N+G P+ G G N G+
Sbjct: 184 ASAVGNGETEKNAGGSKPSSGSAGTNPGASAGGNGETEKNVGGSKPSSGKAGTNPGANAG 243
Query: 683 NQGSYQPGQG 712
G + G
Sbjct: 244 GNGGTEKNAG 253
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +2
Query: 527 SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPG 706
++ G + S GS N G+ G G+ N+G N G NDG+ N G +
Sbjct: 248 TEKNAGGSKSSSGSARTNPGASAGGNGETVSNIGDTESNAGGSKSNDGANNGASG-IESN 306
Query: 707 QGFTG 721
G TG
Sbjct: 307 AGSTG 311
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 35.5 bits (78), Expect = 0.042
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGD---YGQNLGSY 634
P DYY Q + P P G +Y G+ Y+Q D Q+ G Y
Sbjct: 474 PYDYYGRQGGQN-------PGPVPSHGASYSQAGAQQTYGQMYDQPHYDNPPMHQSYGGY 526
Query: 635 GPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPP 769
G +Q Y G + Q S +P G G + Y P P PP
Sbjct: 527 GGSQQGYPSAGGQHQMQQPS-RP-YGMQGS-AEQGYGPPRPAAPP 568
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 551 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ----GSYGQNDGSYNQNQGSYQPGQGFT 718
YQ G P G +NQ Y Q G GP Q G +G + YN + G P QG
Sbjct: 386 YQD-GRPSPYSGGFNQQA--Y-QPRGPGGPPQWGSRGPHGPHSMPYNYHHGGPYPSQGSH 441
Query: 719 GKPLNEKYEEPEPTGPPRGF 778
+P N P+ P G+
Sbjct: 442 FRPPNSGGYPPQHMPPRSGY 461
Score = 28.3 bits (60), Expect = 6.3
Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Frame = +2
Query: 458 ALPSDYYQPQASEQQASVVAPPNS---QPREGKAYQSQGS----YVPNQGSYNQGQGDYG 616
++P +Y+ Q S PPNS P+ GS P+ G Y+ G
Sbjct: 424 SMPYNYHHGGPYPSQGSHFRPPNSGGYPPQHMPPRSGYGSGWEQRPPHSGPYDYYGRQGG 483
Query: 617 QNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKY 742
QN G + SY Q Q QP + P+++ Y
Sbjct: 484 QNPGPVPSHGASYSQAGAQQTYGQMYDQP--HYDNPPMHQSY 523
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 34.3 bits (75), Expect = 0.096
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +2
Query: 518 PPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSY 697
PP RE ++ +G +G +N+G+G Y ++ G+ G G Y + G + ++ SY
Sbjct: 53 PPAQAVREARSDAPRGG--GGRGGFNRGRGGYNRDDGNNG-YSGGYTKPSGEGDVSKSSY 109
Query: 698 QPGQGFTGKPLNE-KYEEPEPTGPPRGFF 781
+ +G G P + E P G RG F
Sbjct: 110 E-RRGGGGAPRGSFRGEGGGPGGGRRGGF 137
>At3g29033.1 68416.m03629 glycine-rich protein
Length = 167
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +2
Query: 551 YQSQGSYVPNQGSYNQG-QGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGF 715
YQ + Q Y G QG+ N G QG N G Y NQ SY+ G+
Sbjct: 87 YQGSAQFYGYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGYQVNQNSYENSCGY 142
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 551 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND-GSYNQNQGSYQPG 706
Y+ + ++ N G N+G G+ GS+G +G YG+ D Y N+G+ + G
Sbjct: 393 YRGRSTFGVNTGYRNEG----GRGRGSFGGGRGGYGRTDFNGYGNNRGNNRGG 441
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +2
Query: 446 QTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNL 625
Q +AL S Y QPQ +QQ ++A +Q ++ + Q Q +Y G Y G Q
Sbjct: 713 QPNQALGSGY-QPQQQQQQQMMMAQYYAQQQQLQQQQQQQAYGNQMGGYGYGYNQQQQGS 771
Query: 626 GSYGPNQGSYG 658
Y +Q YG
Sbjct: 772 SPY-LDQQMYG 781
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.5 bits (73), Expect = 0.17
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQ-GDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGF 715
GSY + G G G YG + G G GSYG + GS ++ G GF
Sbjct: 521 GSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGF 572
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +2
Query: 578 NQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEP 757
+ G G YG G YG G YG G Y G Y G G G EP
Sbjct: 64 HNGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHGGG-GHGLNEPVQ 122
Query: 758 TGP 766
T P
Sbjct: 123 TKP 125
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQ 682
G Y G Y G G YG G YG G +G N+
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHGGGGHGLNE 119
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +2
Query: 488 ASEQQASVVAPPNSQPREGKAYQS-QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 664
++ +Q+ +V P + + + + Y G + + G G G G N G G YG
Sbjct: 22 SAARQSGMVKPESEETVQPEGYGGGHGGHGGHGGGGGHGHG--GHN-GGGGHGLDGYGGG 78
Query: 665 DGSYNQNQGSYQPGQGFTG 721
G Y G Y G G G
Sbjct: 79 GGHYGGGGGHYGGGGGHYG 97
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 33.1 bits (72), Expect = 0.22
Identities = 24/72 (33%), Positives = 30/72 (41%)
Frame = +2
Query: 488 ASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND 667
+ E+ AS APP+S Y + G P QGS GQ YG S G Q
Sbjct: 467 SQEEDASQAAPPSSAQSGQAGYGTTGQQPPAQGS--TGQAGYGAPPTS---QAGYSSQPA 521
Query: 668 GSYNQNQGSYQP 703
+YN G+ P
Sbjct: 522 AAYNSGYGAPPP 533
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 32.7 bits (71), Expect = 0.29
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +2
Query: 452 YKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS 631
YK + S Y + S +Q+ S EG Y+ +G QG Y Q +G G+N G
Sbjct: 1419 YKPVGSHTYDGERSREQSK-----ESSQTEGPRYREKGQGQQRQGGYQQQRGTSGRN-GG 1472
Query: 632 YG 637
+G
Sbjct: 1473 HG 1474
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +2
Query: 551 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKP 727
+QS G+ +P+ GS G G YG GS G G+YG GS G G T P
Sbjct: 229 HQSVGNGLPSYGSSGYGAG-YGN--GSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP 284
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 31.9 bits (69), Expect = 0.51
Identities = 34/98 (34%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Frame = +2
Query: 464 PSDYYQPQA-SEQQASVVAPPNSQ--PREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSY 634
PS Y PQ ++ V P P Y G+Y P QG Y G Q G Y
Sbjct: 183 PSSGYPPQGHDDKHDGVYGYPQQAGYPAGTGGYPPPGAY-PQQGGY---PGYPPQQQGGY 238
Query: 635 G--PNQGSYGQNDGSYNQNQGSY-QPGQGFTGKPLNEK 739
P QG YG Y QG Y P Q GKP K
Sbjct: 239 PGYPPQGPYGYPQQGY-PPQGPYGYPQQQAHGKPQKPK 275
>At3g03680.1 68416.m00371 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1017
Score = 31.5 bits (68), Expect = 0.68
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 101 SQYHGQDGLGAYAYGYQTPES-AKVENRVRSGDVTGSY---IYK--DGKNDLIKVRYWSD 262
SQ G+ GL AY P + A E + + T I K DGK + +
Sbjct: 120 SQIKGEIGLKAYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEK 179
Query: 263 RDGFHQEDNLPKVELKPVEEAPD 331
++G +E+ PK E KP E+ PD
Sbjct: 180 KEGDKKEEEKPKEEAKPDEKKPD 202
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.5 bits (68), Expect = 0.68
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKA-YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGS 652
Y P Q +APP +Q A YQ++G Y P +G + + Q+ G +
Sbjct: 896 YVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQP-RGPSGRFPSEPYQSQSREGQHASR 954
Query: 653 YGQNDGSY-NQNQGSYQPGQG 712
G G++ NQ+Q GQG
Sbjct: 955 GGGYSGNHQNQHQQQQWHGQG 975
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY 655
YQP+ + P SQ REG+ G Y N + +Q Q +GQ GS N Y
Sbjct: 928 YQPRGPSGRFPS-EPYQSQSREGQHASRGGGYSGNHQNQHQQQQWHGQG-GSEQNNPRGY 985
Query: 656 GQNDGSYNQNQGSYQPGQG 712
+G ++ QG +G
Sbjct: 986 ---NGQHHHQQGGDHDRRG 1001
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.1 bits (67), Expect = 0.90
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 512 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND--GSYNQN 685
V P P A+ +G + G D G N+G + PN G +G + GS
Sbjct: 474 VGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMWDPNSGGWGAGEDLGSGRAA 533
Query: 686 QGSY 697
+ SY
Sbjct: 534 ESSY 537
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/57 (28%), Positives = 19/57 (33%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQG 712
G Y G G +G G Y G Y G G G + G Y G+G
Sbjct: 108 GGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEG 164
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
G +Y G G Y+ G G Y G G G + G Y +G G G G
Sbjct: 115 GGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGG 174
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 575 PNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSY 697
P G G YG G Y G YG G Y G Y
Sbjct: 59 PGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGY 99
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/75 (25%), Positives = 25/75 (33%)
Frame = +2
Query: 533 PREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQG 712
P G G Y G Y G YG G YG G Y + Y G
Sbjct: 59 PGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYGGCFRCCA 118
Query: 713 FTGKPLNEKYEEPEP 757
+ G+ + + + EP
Sbjct: 119 YAGQAVQTQPQSTEP 133
>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1046
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = -2
Query: 466 WKGFVGLLVIILRKSFEGVLRIGL--LCSSGS--SFLPCFFMSYTSSPHIWSLFYWFQLD 299
W+G + L L + +GVLR+G LC L FF +Y H+ ++ LD
Sbjct: 404 WEGILRRLENSLDRKIDGVLRVGYDHLCEDDQFLYLLIAFFFNYVDDDHVKAMLVEDNLD 463
Query: 298 LR 293
++
Sbjct: 464 VK 465
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 611 YGQNLGSYGPNQ-GSYGQNDGSYNQNQGSYQPG 706
YG+ G GPN+ G G YNQ++G Y G
Sbjct: 416 YGKPRGPPGPNRYPPSGNQSGGYNQSRGGYSSG 448
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP----NQGSYNQ-GQGDYGQNLG 628
P YQ ++ Q S V P + Q QGS VP Q SY Q G G+Y Q
Sbjct: 268 PPPPYQAGYNQGQGSPVPP-----YQAGYNQVQGSPVPPYQGTQSSYGQGGSGNYSQ--- 319
Query: 629 SYGPNQGSYGQ-NDGSYN-QNQGSYQPGQG 712
GP QG Y Q +YN Q G++ P G
Sbjct: 320 --GP-QGGYNQGGPRNYNPQGAGNFGPASG 346
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/122 (24%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Frame = +2
Query: 425 LPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 604
LP Y K D Y+ + + ++PR GS P N
Sbjct: 164 LPDSYIDPQNKEYGGDKYENGVITHRPPPIQSGRARPRPRFDRSGGGSGGPQNFQRNTQY 223
Query: 605 GDYGQNLG---SYGPNQG--SYGQNDGSYNQN--QGSYQPGQGFTGKPLNEKYEEPEPTG 763
G G SYGP QG + GQ G+ QG Y G P Y + + +
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 764 PP 769
P
Sbjct: 284 VP 285
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP----NQGSYNQ-GQGDYGQNLG 628
P YQ ++ Q S V P + Q QGS VP Q SY Q G G+Y Q
Sbjct: 268 PPPPYQAGYNQGQGSPVPP-----YQAGYNQVQGSPVPPYQGTQSSYGQGGSGNYSQ--- 319
Query: 629 SYGPNQGSYGQ-NDGSYN-QNQGSYQPGQG 712
GP QG Y Q +YN Q G++ P G
Sbjct: 320 --GP-QGGYNQGGPRNYNPQGAGNFGPASG 346
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/122 (24%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Frame = +2
Query: 425 LPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 604
LP Y K D Y+ + + ++PR GS P N
Sbjct: 164 LPDSYIDPQNKEYGGDKYENGVITHRPPPIQSGRARPRPRFDRSGGGSGGPQNFQRNTQY 223
Query: 605 GDYGQNLG---SYGPNQG--SYGQNDGSYNQN--QGSYQPGQGFTGKPLNEKYEEPEPTG 763
G G SYGP QG + GQ G+ QG Y G P Y + + +
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 764 PP 769
P
Sbjct: 284 VP 285
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = +2
Query: 536 REGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGF 715
R G +Y G G Y+ G G Y G G G + G Y +G G G
Sbjct: 96 RGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGG 155
Query: 716 TG 721
G
Sbjct: 156 GG 157
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYGPNQ-GSYGQND-GSYNQNQGSY 697
G Y G Y G G G+ G G + G YG D GSY G +
Sbjct: 123 GGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGGW 169
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 512 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 637
V P N +P +AY G Y SY G G YG G YG
Sbjct: 108 VNPANDRPSAPRAYGGGGGY-----SYGGGGGGYGGGGGGYG 144
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQ-SQGSYVPNQGSYNQGQGDYGQNL 625
Y+ + + S +S R+G+ Q SQ S VP QGS++QG Q+L
Sbjct: 116 YREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGNSQSL 166
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/74 (27%), Positives = 27/74 (36%)
Frame = +2
Query: 491 SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 670
+E + S+ P S + S SY G Y G YG G + G + G
Sbjct: 185 AEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAG 244
Query: 671 SYNQNQGSYQPGQG 712
Y +GS P G
Sbjct: 245 GYGYGRGSVGPEFG 258
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/75 (28%), Positives = 27/75 (36%)
Frame = +2
Query: 518 PPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSY 697
P S R +Y S + SY G YG G YG G + G ++ G Y
Sbjct: 187 PKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGY 246
Query: 698 QPGQGFTGKPLNEKY 742
G+G G Y
Sbjct: 247 GYGRGSVGPEFGGGY 261
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P R G + + S+ P NQGQ +GQN S N + Q + NQG +
Sbjct: 317 PQHVGRSGNSRLGESSFPPLSVQANQGQSRFGQNSESLVSNTTTTRQR---HRANQGQSR 373
Query: 701 PGQ 709
GQ
Sbjct: 374 FGQ 376
>At1g55170.1 68414.m06301 expressed protein
Length = 283
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = +2
Query: 605 GDYGQNLGSY-GPNQGSYGQND---GSYNQNQGSYQPGQGFTGKPLNEKY 742
G YG N + G +GSYG+ND GS ++Q Y G G KP +++
Sbjct: 235 GSYGMNYNNMDGTFRGSYGENDTYLGSSERSQ-YYSHGSGSQKKPRLDRH 283
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Frame = +2
Query: 527 SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS---YGPNQGSYGQNDGSYNQNQGSY 697
S P G Y + P G G YG GS YG G G G Y G+
Sbjct: 50 SAPGSGWGYGAGSGRSPTGWGRGSGYG-YGSGSGSGTGYGYGSGGGGARGGGYGYGSGNG 108
Query: 698 QPGQGFTGKPLN 733
+ G G G N
Sbjct: 109 RSGGGGGGGGFN 120
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 533 PREGKAYQSQGSYVPNQGSYNQGQGD 610
PR+ YQ QG Y+P+ G++ + +GD
Sbjct: 278 PRKTNGYQQQGGYMPS-GAFTRSEGD 302
>At1g29380.1 68414.m03592 hypothetical protein
Length = 228
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +2
Query: 563 GSYVPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYNQNQGSYQPGQGFTG 721
G Y P G+ G GD G G YG P G G D G Y G G TG
Sbjct: 84 GGYPPLYGTTPPGGGDVGGGGGGYGGGTPGGGGGGGGDTGAGAGGGGY-GGGGDTG 138
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/61 (31%), Positives = 21/61 (34%)
Frame = +2
Query: 521 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQ 700
P QP + K Q PNQ Q QN PNQ N S N S +
Sbjct: 144 PKQQPNQQKQPPDQQKQPPNQPRQPPNQQKQPQNEPKQPPNQPKQPPNQASTNGRARSKK 203
Query: 701 P 703
P
Sbjct: 204 P 204
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 494 EQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 604
+ Q S AP N QP +GK +S GS GS + G+
Sbjct: 883 QTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASHGK 919
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/90 (21%), Positives = 31/90 (34%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPN 643
PS P + PP+S + + Q + N G+ N + + N
Sbjct: 38 PSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNN 97
Query: 644 QGSYGQNDGSYNQNQGSYQPGQGFTGKPLN 733
G+ N+ + N N G+ G G N
Sbjct: 98 NGNNKDNNNNGNNNNGNNNNGNDNNGNNNN 127
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 578 NQGSYNQGQGD-YGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPG 706
+QG YN+G G YG G YG ++ G DG Y QG + G
Sbjct: 142 DQGGYNRGGGGGYG---GGYGGDRREGGYGDGGYG-GQGRSEGG 181
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 533 PREGKAYQSQGSYVPNQGSYNQGQGD 610
PR+ YQ QG Y+PN G+ + +GD
Sbjct: 276 PRKTNGYQQQGGYMPN-GTLTRPEGD 300
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 533 PREGKAYQSQGSYVPNQGSYNQGQGD 610
PR+ YQ QG Y+PN G+ + +GD
Sbjct: 276 PRKTNGYQQQGGYMPN-GTLTRPEGD 300
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +2
Query: 512 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQG 691
V+ P+ P +G S G +G + G+G + G YG G YG G
Sbjct: 74 VSGPDGAPVQGN---SGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSD 130
Query: 692 SYQPGQ 709
Y+ G+
Sbjct: 131 CYKCGE 136
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 29.1 bits (62), Expect = 3.6
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Frame = +2
Query: 437 YYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYG 616
++ Q + Q Q +QQ PP+ Q ++ Q Q P Q Q Q G
Sbjct: 133 HHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQQQPTPQQ----QPQRRDG 188
Query: 617 QNLGSYGPNQGSYGQN-DGSYNQNQGSYQPGQGFTGKPLNEKYEEP 751
+L + G G G N + QN GS G K E+ + P
Sbjct: 189 SHLAN-GSANGLVGNNSEPVMRQNPGS---GSSLASKAYEERVKMP 230
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Frame = +2
Query: 494 EQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG-SYGPNQGSYGQNDG 670
E++ ++AP P E K + +G ++ + + LG + G ++ +D
Sbjct: 305 EEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDD 364
Query: 671 SYNQNQGSY------QPGQGFTGKPLNEKYEEPEPTGPPRG 775
S ++ + +Y + + +P++ +P P+GPPRG
Sbjct: 365 SDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPPRG 405
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 28.7 bits (61), Expect = 4.8
Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Frame = +2
Query: 467 SDYYQPQ-ASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQ--GQGDYGQNLGSYG 637
S Y P AS+ Q+S + P A Y P+ G YN+ + YG G YG
Sbjct: 44 SPYAVPYGASKPQSSSSSAPTYGSSSYGAPPPSAPYAPSPGDYNKPPKEKPYG---GGYG 100
Query: 638 PNQGSYGQNDGSYNQNQGSYQP---GQGFTGKP 727
S + GSY QP G G+ P
Sbjct: 101 APPPSGSSDYGSYGAGPRPSQPSGHGGGYGATP 133
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +2
Query: 695 YQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPV 802
Y P GFTG L P GPP F Y+ PV
Sbjct: 1887 YAPPAGFTGPFLTPPGAIPGVQGPPHMFVYNHFAPV 1922
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +2
Query: 554 QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQG 712
+S+ YN G G G G G N G G N G YN G G G
Sbjct: 29 KSESGETVQPDQYNGGHGGNGGYNGGGGYNGGG-GHNGGGYNGGGGYNGGGHG 80
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +2
Query: 560 QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEK 739
+G +P G G G G GP G G N G+ NQ G G+G G PL+ K
Sbjct: 302 EGKGMPFPVQMGGGGGGPGGKKG--GPGGG--GGNMGNQNQGGGGKNGGKGGGGHPLDGK 357
>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
G-box binding factor 1 SP:P42774 from [Arabidopsis
thaliana]; contains Pfam profile: PF00170 bZIP
transcription factor
Length = 313
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQ----------GQGDYGQNL 625
Y P A S+ PPNS P + + Q S ++G+ + G G+ G +
Sbjct: 82 YPPGAVYAHPSMPMPPNSGPTNKEPAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASH 141
Query: 626 GSYGPNQGSYGQNDGSYNQNQGSYQPGQG 712
GS +ND + NQ +P G
Sbjct: 142 SDESVTAGSSDENDENANQQGSIRKPSFG 170
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 629 SYGPNQGSYGQNDGSYNQNQGSYQP 703
+Y P +GS Q +GS ++N +Y+P
Sbjct: 207 NYQPQKGSANQKNGSDHKNNSAYEP 231
>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
{Lycopersicon esculentum}; contains Pfam profile
PF00909: Ammonium Transporter Family
Length = 504
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 701 PGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPV 802
P GF GK Y+ P+PT F Y +T+ +
Sbjct: 112 PSNGFIGKHFFGMYDFPQPTFDYPYFLYQWTFAI 145
>At1g61070.1 68414.m06876 plant defensin-fusion protein, putative
(PDF2.4) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains gamma-thionin
domain
Length = 76
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 674 SCHRFDRNCLDLARSCLDFGHNRLGPDYSCLGLERSCLGSDRPC 543
S + F+ CL + +C + HN D C G R CL RPC
Sbjct: 35 SSNLFNGPCLS-SSNCANVCHNEGFSDGDCRGFRRRCL-CTRPC 76
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/109 (19%), Positives = 41/109 (37%)
Frame = +2
Query: 443 QQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQN 622
QQ ++ P + + +S PP+ + ++ + P Q N +G+ +N
Sbjct: 57 QQQQESPPPPLPENSSDGSSSSSPPPPSDSSSQSQSPPPPSTSPPQQSDNNGNKGNNNEN 116
Query: 623 LGSYGPNQGSYGQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPP 769
N+G+ G + N+N P T + + +P PP
Sbjct: 117 ------NKGNDGSSGDGGNKNMSHTPPPPSKTSD--HSSHSQPRSLAPP 157
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 572 VPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYN 679
VP SY+ G YG G YG P+ G G G Y+
Sbjct: 208 VPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGGYD 246
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 572 VPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYN 679
VP SY+ G YG G YG P+ G G G Y+
Sbjct: 208 VPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGGYD 246
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +2
Query: 632 YGPNQGSY---GQNDGSYNQNQGSYQPGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 799
Y P G+Y G G+Y G Y P G+ G P Y P P G + YP
Sbjct: 37 YPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGY-GGYPPAPGHGGYPPAGYP 94
>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
similar to fructan 1-exohydrolase IIa GI:13940209 from
[Cichorium intybus]; contains Pfam profile PF00251:
Glycosyl hydrolases family 32
Length = 550
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 131 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 268
+Y G +T +++V ++ G+ Y++ DG+N +I + WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541
>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
G-box binding factor 1 SP:P42774 from [Arabidopsis
thaliana]; contains Pfam profile: PF00170 bZIP
transcription factor
Length = 315
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQ----------GQGDYGQNL 625
Y P A S+ PPNS P + + Q S ++G+ + G G+ G +
Sbjct: 82 YPPGAVYAHPSMPMPPNSGPTNKEPAKDQASGKKSKGNSKKKAEGGDKALSGSGNDGASH 141
Query: 626 GSYGPNQGSYGQNDGSYN-QNQGS 694
GS +ND + N Q QGS
Sbjct: 142 SDESVTAGSSDENDENANQQEQGS 165
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 587 SYNQGQGDYGQNLGSYG-PNQGSYGQNDGSYNQNQGSYQPGQGFT 718
S++ G G G N G +G + GS+G G + N G G G++
Sbjct: 28 SWSWGSGQSGSN-GDWGWSSGGSFGSGSGGSDSNSGGSSWGWGWS 71
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG 628
P D Q E+ A V+ P S G++ S GS ++ YN GQ++G
Sbjct: 211 PKDNLYEQKPEEVAPVI-PAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSVG 264
>At1g71680.1 68414.m08271 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GB: AAC49885 GI:2576361 from (Arabidopsis
thaliana); contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 434
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 445 LVIILRKSFEGVLRI--GLLCSSGSSFLPCFFMSYTSSPHIWSLFYW 311
LV + F G+L GL+ SS S FLPC P +S +W
Sbjct: 369 LVAVCIPFFGGLLGFFGGLVFSSTSYFLPCIIWLIMKRPKRFSAHWW 415
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 542 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYN 679
G + S GS+ N G G G YG G + + S+GQ N
Sbjct: 115 GGFFTSAGSFFRNNGFAGTGNGGYGNENGGF-RRKKSFGQGKRRMN 159
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = +2
Query: 464 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQ 619
P QP S QQ S P QPR Y Q Y P +QG G Y Q
Sbjct: 801 PQAQQQPHPSWQQGSYYDPQGQQPR--PPYPGQSPYQPP----HQGGGYYRQ 846
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 476 YQPQASEQQASVVAPPNSQPREGKAYQSQ 562
Y PQA +A+VV P +Q K YQ+Q
Sbjct: 488 YLPQAQAYKANVVCPNKNQADPEKFYQNQ 516
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,038
Number of Sequences: 28952
Number of extensions: 369607
Number of successful extensions: 1710
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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