Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30924
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare cold-in...    31   0.66 
At5g64120.1 68418.m08052 peroxidase, putative identical to perox...    29   3.5  
At5g39580.1 68418.m04794 peroxidase, putative identical to perox...    28   4.7  
At5g35960.1 68418.m04330 protein kinase, putative contains prote...    28   4.7  
At4g10670.1 68417.m01743 transcription elongation factor-related...    28   6.1  
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL...    27   8.1  
At5g18910.1 68418.m02246 protein kinase family protein contains ...    27   8.1  

>At1g05260.1 68414.m00532 peroxidase 3 (PER3) (P3) / rare
           cold-inducible protein (RCI3A) (PRC) identical to
           SP|O23044 Peroxidase 3 precursor (EC 1.11.1.7) (Atperox
           P3) (Rare cold inducible protein) (RCI3A) (ATPRC)
           {Arabidopsis thalliana}
          Length = 326

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +2

Query: 41  IAFDFI*VRSVRPLSK*LKITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYH 220
           ++  F  V  V P+   L++  + ++ PN E +IV   + N H SN   LAA L+  ++H
Sbjct: 9   LSVSFFLVGIVGPIQAQLQMNFYANSCPNAE-KIVQDFVSN-HVSNAPSLAAALIRMHFH 66

Query: 221 LC 226
            C
Sbjct: 67  DC 68


>At5g64120.1 68418.m08052 peroxidase, putative identical to
           peroxidase [Arabidopsis thaliana]
           gi|1483222|emb|CAA67551
          Length = 328

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +2

Query: 137 EIVHINMKNTHFSNTLRLAAGLLYFYYHLCGSRVRIGPLHLIPWMS*EATKGINVN 304
           E +  N  N  FS+  R+A G+L  ++H C  +   G + LI   + E T G N+N
Sbjct: 48  ETIVRNAVNAGFSSDPRIAPGILRMHFHDCFVQGCDGSI-LISGANTERTAGPNLN 102


>At5g39580.1 68418.m04794 peroxidase, putative identical to
           peroxidase ATP24a [Arabidopsis thaliana]
           gi|1890313|emb|CAA72484
          Length = 319

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +2

Query: 95  KITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYHLCGSRVRIGPLHLIPWMS 274
           +I  + +  PN E  IV   + + HF +  ++A GLL  + H C  +   G + L+   +
Sbjct: 26  RIGFYSTTCPNAE-TIVRTTVAS-HFGSDPKVAPGLLRMHNHDCFVQGCDGSV-LLSGPN 82

Query: 275 *EATKGINVNEH 310
            E T G NVN H
Sbjct: 83  SERTAGANVNLH 94


>At5g35960.1 68418.m04330 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 429

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 355 ELLGPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSY 236
           +LLG   +G  HL   L    SL+ +L   +++M+WS  Y
Sbjct: 193 KLLGYGVEGGMHLVLELSPHGSLASMLYSSKEKMKWSIRY 232


>At4g10670.1 68417.m01743 transcription elongation factor-related
           low similarity to chromatin-specific transcription
           elongation factor FACT 140 kDa subunit [Homo sapiens]
           GI:5499741
          Length = 470

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  ITSFRSNRPNEEFEIVHINMKNTHFSNTLRLAAGLLYFYYH 220
           +  FR +  NE  +++  N+K+  F    +    LL+F+ H
Sbjct: 143 VNGFRYSTTNERVDVLFANIKHAFFQPAEKEMTTLLHFHLH 183


>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
           identical to IAA-amino acid hydrolase homolog ILL3
           [Arabidopsis thaliana] gi|3420801|gb|AAC31939
          Length = 428

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 310 MLINIYSLSRLLRHPRDEMEWSYSYP-GTTQVIIKI 206
           +L  ++  S L+R   DE+  SYSYP   T ++ +I
Sbjct: 54  LLFELHKTSALIRRELDELGVSYSYPVAKTGIVAQI 89


>At5g18910.1 68418.m02246 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 511

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 355 ELLGPSTQGSSHLT*MLINIYSLSRLLRHPRDEMEWSYSYP---GTTQVIIKIQESSRK 188
           +L+G   +G  HL   L    SL+ LL   ++++ WS  Y    GT + +  + E  ++
Sbjct: 251 KLIGYCVEGGMHLVLELSPNGSLASLLYEAKEKLNWSMRYKVAMGTAEGLYYLHEGCQR 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,329
Number of Sequences: 28952
Number of extensions: 268416
Number of successful extensions: 470
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)