Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30921
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66620.1 68418.m08397 LIM domain-containing protein contains ...    28   4.0  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    28   5.2  
At2g45460.1 68415.m05654 forkhead-associated domain-containing p...    28   5.2  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    28   5.2  

>At5g66620.1 68418.m08397 LIM domain-containing protein contains
           Pfam profile PF00412: LIM domain
          Length = 644

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 293 DEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 144
           DE F K  KE L N KG   K   F  EQ+K+ E      +E ++ +E P
Sbjct: 183 DEQFAKAVKESLKN-KG---KGKQFEDEQVKKDEQLALIVQESLNMVESP 228


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 278 KKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 147
           K +   L  +K  L +E+A H  Q    ++ IRR K+++  + K
Sbjct: 516 KCEISSLKEIKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNK 559


>At2g45460.1 68415.m05654 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 915

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -2

Query: 278 KKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDI 153
           ++++  +A LK  +++     QE++KR  DA  RH+ +  ++
Sbjct: 371 EERETAIAELKAAIHRCQIEAQEELKRFSDAAMRHEREQQEV 412


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 314 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRR-HKEQMSDIEKPQ 141
           + E  +E E  Y+K+KE+    K    KEI + +E+ +  +D+ RR H+  + +  + Q
Sbjct: 486 RREREKEKERQYEKEKEKEKERKR--KKEIRYEEEEEEDDDDSRRRWHRAALDERRRRQ 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,084
Number of Sequences: 28952
Number of extensions: 182925
Number of successful extensions: 437
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)