Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30919
         (304 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   1.6  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   2.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   2.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   2.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   3.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    20   6.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 1.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 11  QVITLKEANWSSVSSIIHKG 70
           Q ++  + +W+S+SS+ H G
Sbjct: 369 QTLSELDLSWNSISSLSHGG 388


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = +2

Query: 236 LDELLENNKITKD 274
           +DE+L+N+++TK+
Sbjct: 29  IDEILKNDRLTKN 41


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 127 ETTFFFNELHAPS*SNYS 74
           E   FF EL AP   NY+
Sbjct: 306 EAETFFRELEAPCPRNYN 323


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 127 ETTFFFNELHAPS*SNYS 74
           E   FF EL AP   NY+
Sbjct: 306 EAETFFRELEAPCPRNYN 323


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 52  LYNSQRRHYNW 84
           +YNS +R Y W
Sbjct: 148 VYNSMKREYYW 158


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 218 VGTNWHQSANH 186
           VGT  HQ  NH
Sbjct: 193 VGTQIHQQTNH 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,509
Number of Sequences: 336
Number of extensions: 1184
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5412171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)