Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30919
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 95 2e-21
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 29 0.11
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 0.46
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 0.80
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 1.4
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 1.4
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 2.4
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 24 4.3
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 24 4.3
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 4.3
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 24 5.6
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi... 24 5.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 24 5.6
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 24 5.6
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 23 7.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 23 7.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 23 7.5
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 23 7.5
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 23 7.5
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 23 9.9
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 23 9.9
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 23 9.9
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 95.5 bits (227), Expect = 2e-21
Identities = 43/94 (45%), Positives = 63/94 (67%)
Frame = +2
Query: 23 LKEANWSSVSSIIHKGGTIIGSARCMEFIKKERRFKAAYNLMSRGITNLAVIGGDGSLTG 202
+K+ W V + +GGT+IG+ARCM F ++ R +AA NL+S GI ++ V GGDGSLTG
Sbjct: 244 IKQLQWGDVRGWLAEGGTLIGTARCMAFRERPGRLRAAKNLISAGIDSIIVCGGDGSLTG 303
Query: 203 ANLFRQEWSNLLDELLENNKITKDQREKYKFLHI 304
A++FR +W L+ EL + IT +Q + Y+ L I
Sbjct: 304 ADIFRSDWPGLVKELEDTKAITPEQAKLYRHLTI 337
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 29.5 bits (63), Expect = 0.11
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 191 SLTGANLFRQEWSNLLDEL 247
S+ AN+FR EWSN LD +
Sbjct: 487 SILRANMFRNEWSNFLDSV 505
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 0.46
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 125 FKAAYNLMSRGITNLAVIGGDGSLTGANLFRQEWSNLLDELLENNKITKDQREKYK 292
FK +S+ +TN+A +LTG R E+ LL E +N I D+++ +
Sbjct: 747 FKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYI-LLHEFKKNGYIVPDKQQSIR 801
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 0.80
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 140 NLMSRGITNLAV--IGGDGSLTGANLFRQEWSNLLDELLENNKITKDQREKY 289
+++S + L+V + G L G+ + +E + +D+L+E KI +RE++
Sbjct: 21 SILSGSMDQLSVGSMEDSGILKGSKTWLEELESTIDDLIEVKKIGAKEREEH 72
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 1.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 104 FIKKERRFKAAYNLMSRGITNLAVIGGDGSLTGANLFRQEWSNLLDE 244
F+ ++RR A ++R +L VIG ++ A+ F +W + L+E
Sbjct: 604 FLAEKRRLNVA---ITRPKRHLCVIGDSNTVKWASEFFHQWVDFLEE 647
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 167 LAVIGGDGSLTGANLFRQEWSNLLDELLENNK 262
L +IGG G G N++ + WS + +L N K
Sbjct: 908 LFIIGGIGMNVGTNVWLKHWSEVNTQLGYNPK 939
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 191 SLTGANLFRQEWSNLLDELLENNKIT 268
S+T Q W LL+ L NN+IT
Sbjct: 228 SVTAVTTLAQTWPKLLNLSLANNRIT 253
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 24.2 bits (50), Expect = 4.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 212 FRQEWSNLLDELLENNKITKDQREKYKFLHI 304
+R+ LL+EL +N K T D +++ + LH+
Sbjct: 124 YRESHLKLLNEL-QNVKDTNDLKDRIRLLHL 153
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 24.2 bits (50), Expect = 4.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 304 YVQKFIFFPLIFSNFVVLQQFI 239
Y KF+FFP + + V +Q I
Sbjct: 21 YSSKFLFFPCLIMSLVFMQWLI 42
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 4.3
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +3
Query: 210 CSDKNGLTFLMNCWRT 257
C+D G+ ++NCW +
Sbjct: 1127 CADYRGINEILNCWES 1142
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 23.8 bits (49), Expect = 5.6
Identities = 7/24 (29%), Positives = 18/24 (75%)
Frame = +2
Query: 224 WSNLLDELLENNKITKDQREKYKF 295
W+ +++LLE++++T D +++ F
Sbjct: 216 WNRDIEQLLEDSELTIDSCKRFNF 239
>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 151
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 207 LAPVSEPSPPITARFVIPRLIKLYAALK 124
L+P S + PIT F +PR++ ++ LK
Sbjct: 123 LSPAS--TRPITWSFCLPRMVSVFQKLK 148
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 209 LFRQEWSNLLDELLENNKITKDQREKYKFL 298
L +Q+ SNL +++ NK+ K+ EK L
Sbjct: 859 LAKQKCSNLQEKINFGNKLAKEHTEKISSL 888
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +2
Query: 239 DELLENNKITKDQREKYK 292
DE+LE++K +KD+ E+ K
Sbjct: 213 DEILEDSKESKDENEENK 230
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 204 PICSDKNGLTFLMNCWRTTKLLKIKGK 284
P + NGL F + RTT +K++G+
Sbjct: 306 PFTTSLNGLGFGITLLRTTDRVKVEGE 332
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 23.4 bits (48), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 218 QEWSNLLDELLENNKITKDQREKYK 292
+E S++ D+L E N+ K+Q E Y+
Sbjct: 516 EEESSMKDDLTEMNQRLKEQIESYE 540
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 23.4 bits (48), Expect = 7.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 188 GSLTGANLFRQEWSNLLDELLENNKITKDQREKY 289
GSL A+L WS +LDEL ++K + + Y
Sbjct: 80 GSLECASL--TTWSKILDELTRSSKTHQKLSDDY 111
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 67 FVNYRANRRPVRFLQCYHL 11
F +Y + P+ L CYHL
Sbjct: 1037 FTSYFVEKFPMLLLHCYHL 1055
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 231 LDHSCRNKLAPVSEPSPPITARFVI 157
L+HS +N + P + PP+ A ++
Sbjct: 166 LNHSLQNSMPPSTPTPPPVWAPTIV 190
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = +2
Query: 23 LKEANWSSVSSIIHKGGTIIGSARCMEFIKKERRFKAAYNLMSRGI 160
L E + ++ ++ GG +IG C + K + M GI
Sbjct: 384 LNEGGYQAIPKLVFPGGALIG---CSAGFVNVAKIKGTHTAMKSGI 426
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 23.0 bits (47), Expect = 9.9
Identities = 6/11 (54%), Positives = 10/11 (90%)
Frame = -1
Query: 46 RRPVRFLQCYH 14
++P++FL CYH
Sbjct: 138 KKPLQFLHCYH 148
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 286 FFPLIFSNFVVLQQFIKKVRPFLSEQIGTSQRTITTNNRKIR 161
F+P I N+V + K V +SE + +Q I T +R
Sbjct: 707 FYPQIAKNYVDMLGLYKAVSGLISEVV-AAQGNIATKTPHVR 747
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,510
Number of Sequences: 5004
Number of extensions: 20317
Number of successful extensions: 82
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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