Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30919
(304 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42230| Best HMM Match : PFK (HMM E-Value=0) 58 1e-09
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21) 32 0.078
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) 27 2.2
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 26 5.1
SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0) 26 5.1
SB_2042| Best HMM Match : Amidase (HMM E-Value=0) 26 5.1
SB_38780| Best HMM Match : Astacin (HMM E-Value=0) 26 6.7
SB_36785| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08) 26 6.7
SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12) 26 6.7
SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08) 26 6.7
SB_52006| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41) 26 6.7
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35) 26 6.7
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
Length = 1103
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +2
Query: 155 GITNLAVIGGDGSLTGANLFRQEWSNLLDELLENNKITKDQREKYKFLHI 304
GI VIGGDGSLTGAN F+QEW+ LL+EL+ IT + K L+I
Sbjct: 644 GIIQQVVIGGDGSLTGANYFKQEWTGLLEELVSKGSITPEMAAKNNSLNI 693
>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
Length = 457
Score = 32.3 bits (70), Expect = 0.078
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 47 VSSIIHKGGTIIGSARCMEFIKKERRFKAAYNLMSRGITNLAVIGGDGSLTGANL 211
V+ ++ GGTI+G A C E F AA + + N GG S GA L
Sbjct: 131 VTRVLDAGGTIVGKAVCEELSISGSSFTAATGPVMNPLDNRRETGGSSSGCGALL 185
>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
Length = 323
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/39 (23%), Positives = 21/39 (53%)
Frame = +2
Query: 62 HKGGTIIGSARCMEFIKKERRFKAAYNLMSRGITNLAVI 178
++ T + S C++++K+ YN+ G+T+L +
Sbjct: 80 YRENTAVESKSCLDYLKRGAADNGVYNIHVEGVTHLVPV 118
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 170 AVIGGDGSLTGANLFRQEWSNLLDELLENNKITKDQ 277
A IGG+ S+ NLF L LL+NN + KD+
Sbjct: 586 ANIGGNDSIV-VNLFYNVTLELRRTLLQNNNVRKDR 620
>SB_18844| Best HMM Match : tRNA-synt_1b (HMM E-Value=0)
Length = 252
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 155 GITNLAVIGGDGSLTGANLFRQEWSNLLDE--LLENNKITKDQREKY 289
G T++A++GG + G + NLLDE L +N K Q E++
Sbjct: 7 GHTSIALVGGATGMVGDPSGKSAERNLLDEATLAKNIAGVKSQLERF 53
>SB_2042| Best HMM Match : Amidase (HMM E-Value=0)
Length = 796
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 47 VSSIIHKGGTIIGSARCMEFIKKERRFKAAYNLMSRGITNLAVIGGDGSLTGA 205
V+ ++ GG I+G + C +F + F A + + GG S + A
Sbjct: 85 VTRVLDAGGRILGKSVCEDFCCSDESFSTATGPVLNPLDTTRSAGGSSSGSAA 137
>SB_38780| Best HMM Match : Astacin (HMM E-Value=0)
Length = 1153
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 190 RNNLLQLIEPGPPISERLMLMKL 212
>SB_36785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 73 RNNLLQLIEPGPPISERLMLMKL 95
>SB_16938| Best HMM Match : Exo_endo_phos (HMM E-Value=2.7e-08)
Length = 554
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 73 RNNLLQLIEPGPPISERLMLMKL 95
>SB_7575| Best HMM Match : Exo_endo_phos (HMM E-Value=3.4e-12)
Length = 548
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 177 RNNLLQLIEPGPPISERLMLMKL 199
>SB_56675| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-08)
Length = 545
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 73 RNNLLQLIEPGPPISERLMLMKL 95
>SB_52006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 73 RNNLLQLIEPGPPISERLMLMKL 95
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 1643 RNNLLQLIEPGPPISERLMLMKL 1665
>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 73 RNNLLQLIEPGPPISERLMLMKL 95
>SB_12357| Best HMM Match : RVT_1 (HMM E-Value=7.69999e-41)
Length = 889
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 216 RNKLAPVSEPSPPITARFVIPRL 148
RN L + EP PPI+ R ++ +L
Sbjct: 119 RNNLLQLIEPGPPISERLMLMKL 141
>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
Length = 1311
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 128 KAAYNLMSRGITNLAVIGGDGSLTGANLF 214
K YNL S+ + L GGD S T +N F
Sbjct: 237 KRVYNLQSKQLVKLFSQGGDVSETISNFF 265
>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1399
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 215 RQEWSNLLDELLENNKITKDQREKYK 292
R + N+ DEL + +IT+++ E+Y+
Sbjct: 212 RTHYRNVADELRDKLRITEEELERYR 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,659,074
Number of Sequences: 59808
Number of extensions: 145326
Number of successful extensions: 382
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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