Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30918
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 35 0.011
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.69
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.91
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.91
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.9
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 8.5
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 25 8.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 35.1 bits (77), Expect = 0.011
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Frame = +1
Query: 28 STPFTIHLPKEAMT--TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTV 195
STP T + T TS T T+ SST + +S TSS V +S P T +
Sbjct: 2337 STPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2396
Query: 196 AKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+ T + TPI S + STS+
Sbjct: 2397 STPITSSSVLNSSTPITSSTVVNTSTSI 2424
Score = 34.3 bits (75), Expect = 0.018
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +1
Query: 28 STPFTIHLPKEAMT--TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTV 195
STP T + T TS TA T+ SST + + TSS V TS P T +
Sbjct: 1629 STPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNS 1688
Query: 196 AKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+ T TPI S ++ST +
Sbjct: 1689 STPITSSTALNTSTPITSSSVLNSSTPI 1716
Score = 34.3 bits (75), Expect = 0.018
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = +1
Query: 28 STPFTIHLPKEAMT--TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTV 195
STP T + T TS TA T+ SS+ + + TSS V TS P T +
Sbjct: 2289 STPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNS 2348
Query: 196 AKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+ T TPI S + STS+
Sbjct: 2349 STPITSSTVVNTSTPITSSTALNTSTSI 2376
Score = 29.5 bits (63), Expect = 0.52
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Frame = +1
Query: 28 STPFTIHLPKEAMT--TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTV 195
STP T + T TS TA T+ SST + + TSS V +S P T
Sbjct: 3021 STPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNT 3080
Query: 196 AKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+ T + T I S ++ST +
Sbjct: 3081 STPITSSSVLNSSTAITSSSIVNSSTPI 3108
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Frame = +1
Query: 28 STPFTIHLPKEAMT--TSCTARRTTKKFASSTFMRRHSSNTSSKV--TSRPSTKKLICTV 195
STP T + T TS TA T+ SST + + TSS V +S I
Sbjct: 3405 STPITSSTVVNSSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNS 3464
Query: 196 AKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+ T + TPI S ++S +
Sbjct: 3465 STPITSSSVLNSSTPISSSTVITSSVVI 3492
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.69
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 67 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 246
TT+CT + ++ ++ ++S+ VTS P T CT + S L+ +T +P
Sbjct: 552 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTS-TSVLYTSTPITSP-- 607
Query: 247 SKKTSSNSTSV 279
TSS+ST V
Sbjct: 608 -NSTSSSSTQV 617
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +1
Query: 67 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 246
TT+CT + ++ ++ ++S+ VTS P T CT + +T TP+
Sbjct: 493 TTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVT-TTNCTTSTSVLYTSTPVTSTPL- 550
Query: 247 SKKTSSNSTSV 279
+ + STSV
Sbjct: 551 ATTNCTTSTSV 561
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.91
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 109 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 276
SS+ SS++SS +SRPS+ T ST +T S TSS S
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS 270
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 133 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTS 276
SS TSS +S PS+ T + S+ +++ + S +SS+S+S
Sbjct: 133 SSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 28.7 bits (61), Expect = 0.91
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 133 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNS 270
S ++++ +TS + +I T + +++ +T TPI S TSSNS
Sbjct: 154 SDSSATTITSSSPSTSIIGTGSTDTSVSSTLTYHTPIASPTTSSNS 199
Score = 26.2 bits (55), Expect = 4.9
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +1
Query: 31 TPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPST--KKLICTVAKQ 204
T T + K + ++ T + F SST + SS+TSS +S+ ST T+A
Sbjct: 249 TESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIA-T 307
Query: 205 STLWATTGRRTPIYSKKTSSNS 270
STL TT +PI + S +S
Sbjct: 308 STLQPTTS--SPITTSAPSLSS 327
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Frame = +1
Query: 37 FTIHLPKEAMTTSCTARRTTKKFASSTFMRRHS---SNTSSKVTSRPSTKKLICTVAKQS 207
F P + +TT T + + R S S +S K S PST K +
Sbjct: 615 FVQRSPSKMLTTLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVPSTPKASLSPRVHK 674
Query: 208 TLWATTGRRTPIYSKKTSSNSTSV 279
++ + +P+Y+ K+ +ST V
Sbjct: 675 SMTYSPSEASPLYANKSPKSSTMV 698
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 2.8
Identities = 25/88 (28%), Positives = 36/88 (40%)
Frame = +1
Query: 13 ATSRLSTPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 192
ATS STP T A + S T + S++ S +S V S +
Sbjct: 367 ATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLS 426
Query: 193 VAKQSTLWATTGRRTPIYSKKTSSNSTS 276
A +T AT+ TP+ S S+ +TS
Sbjct: 427 SANSTT--ATSASSTPL-SSVNSTTATS 451
Score = 27.1 bits (57), Expect = 2.8
Identities = 26/88 (29%), Positives = 36/88 (40%)
Frame = +1
Query: 13 ATSRLSTPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICT 192
ATS STP T A + S T + S++ S +S V S +
Sbjct: 481 ATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLS 540
Query: 193 VAKQSTLWATTGRRTPIYSKKTSSNSTS 276
A +T AT+ TP+ TS NST+
Sbjct: 541 SANSTT--ATSASSTPL----TSVNSTT 562
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.7
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 28 STPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPS--TKKLICTVAK 201
S P T +++ +++ + +SSTF ++TSS S S + + +
Sbjct: 167 SDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSS 226
Query: 202 QSTLWATTGRRTPIYSKKTSSNSTS 276
STL +++ + I S +SS+STS
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTS 251
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 8/43 (18%)
Frame = +3
Query: 603 YKVRQPRLNHKP--FTVTIDIKSDVATNAV---VKM---FLGP 707
Y+V++PRLN +P +T ++++ +A+N V VK+ FLGP
Sbjct: 554 YEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGP 596
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +3
Query: 513 KMVTFFDHF-DFDAFNTVYFSKEELKSSPHGYKVRQPRLNHKPFTVTIDIKSDVATNAVV 689
++V F F D +N+ + S + +K + L++K F + +++ TN+ V
Sbjct: 35 ELVVFATAFGDVSIYNSSFKSLQSIKVEDESSIQQILWLDNKTFLLFSNVEGGTGTNSTV 94
Query: 690 KMFLGPKYDENGFP 731
++ + DEN P
Sbjct: 95 IIYAFSQADENEPP 108
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 388 QPSTSSIKGLFNTSSNLNSTRYHTH--KKLFTSLV*KFPTSKST 513
QPS + + G + S N NS+R T+ ++ F+S P+S T
Sbjct: 41 QPSLNKLGGFSSASLNFNSSRSSTNDDQQTFSSQSDNLPSSPIT 84
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 67 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 246
TTS ++ T +SS+ SS++SSK +S S+ K + ++T TT ++ Y
Sbjct: 132 TTSSSSSATPSTTSSSSSSSSSSSSSSSKSSS--SSSKSSSRSSSRTTSHRTTSHKSSSY 189
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 67 TTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATT 225
++S ++ + +SS+ SS++SSK ++ PS+ K + S + +TT
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTT 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.120 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,354
Number of Sequences: 5004
Number of extensions: 53470
Number of successful extensions: 226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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