Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30918
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 30 2.2
11_04_0306 + 16176873-16177124,16178155-16179152,16179204-161793... 29 2.9
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518... 29 2.9
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 2.9
02_03_0134 - 15596379-15597689 29 2.9
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315 29 3.9
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.1
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 29 5.1
09_03_0177 - 13120816-13120941,13121032-13121137,13121231-131213... 28 6.7
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 8.9
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 28 8.9
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.9 bits (64), Expect = 2.2
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 1 LFELATSRL-STPFTIHLPK---EAMTTSCTARRTTKKF-ASSTFMRRHSSNTSSKVTSR 165
L +TS++ STP T L + +T+CT+ +T SST S ++SK +S
Sbjct: 548 LLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTSTSKTSST 607
Query: 166 PSTKKLICTVAKQSTLWATTGRRTP 240
PST L + K T T TP
Sbjct: 608 PSTSPLSSSTIKIPTTARTGELSTP 632
>11_04_0306 +
16176873-16177124,16178155-16179152,16179204-16179339,
16179448-16179597,16179711-16179891,16181139-16181298,
16182156-16182378
Length = 699
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 130 HSSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIY 246
H TS+ + PSTK L+C+ +Q+ L + R P+Y
Sbjct: 583 HLDTTSTSINLHPSTKLLLCS-QEQAGLKFSLSRACPLY 620
>07_01_0686 -
5184061-5184267,5184655-5184762,5185405-5185578,
5185680-5185808,5185891-5186178,5186341-5186570,
5186619-5187516
Length = 677
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 653 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 507
N +ER+ V KTW++ + + FF + G + + VE+ KE + F D
Sbjct: 442 NHFAERMGVRKTWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEFFGD 491
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 7 ELATSRLSTPFTIHL-----PKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSR 165
E TSRL +I L P+E+ +T CT R ++ F M+ + S+ S+K R
Sbjct: 78 EPKTSRLDVKKSISLILGISPEESTSTPCTGRNSSLPFEEIRRMKNNLSDISNKARER 135
>02_03_0134 - 15596379-15597689
Length = 436
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 79 TARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTLWATTG 228
TAR + K + T + S+ S ++SRP K+ + AKQ T AT G
Sbjct: 121 TARNRSSKDMNRT-AKSSSAMQKSNLSSRPGVDKMAASSAKQRTQKATPG 169
>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
Length = 678
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 133 SSNTSSKVTSRPSTKKLICTVAKQSTLWATTGRRTPIYSKKTSSNSTSV 279
+S ++S ++RP+T CT A T +P +K+TSS S+SV
Sbjct: 635 ASRSASPTSARPATSSWTCTS-------AATASASPATAKRTSSTSSSV 676
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 689 DDGVSGNIRFNINCHSERLVV 627
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 569 EVDGVEGIEVEMVKECDHFVDFDVGNFQTNEVKSFLCVWYLVLFKF 432
E+ ++ EV ++K C F F + Q + +LC+ ++VL +
Sbjct: 409 ELSRLDNPEVSLIKACLVFTTFSMALVQKCRLTQYLCLVFIVLVDY 454
>09_03_0177 -
13120816-13120941,13121032-13121137,13121231-13121305,
13121385-13121461,13122462-13122549,13122638-13122699,
13122807-13122863,13122960-13123049,13123186-13123251,
13123530-13123619,13123711-13123804,13123915-13124213
Length = 409
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 390 AFYQLYKRIVQYIIEFKQYQVPYTQEALHFVGLKI 494
A+ K ++ EF+ ++ P+ EA+H V L+I
Sbjct: 91 AYSSFEKAANAFLQEFRNWETPWAMEAMHTVALEI 125
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +1
Query: 31 TPFTIHLPKEAMTTSCTARRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQST 210
TP LPK T S + R ++ S T N S +RP+ + + QST
Sbjct: 35 TPSPNILPKRTATRSSSTTRASRLSVSQT------ENGHSTAPTRPARSNSVTRPSIQST 88
Query: 211 LWATTGRRTPIYSKKTSSNST 273
L +++ RT + + SS S+
Sbjct: 89 LMSSS-NRTAVLNTSISSVSS 108
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 453 PYTQEALHFVGLKISDVKVDKMVTFF 530
PYTQ AL FV L + K+D+ T F
Sbjct: 506 PYTQSALLFVDLGMDVYKIDRACTKF 531
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.120 0.340
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,155
Number of Sequences: 37544
Number of extensions: 336377
Number of successful extensions: 919
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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