Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30916
(714 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 56 3e-08
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 54 7e-08
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ... 54 7e-08
At1g13050.1 68414.m01513 expressed protein 32 0.33
At2g19410.1 68415.m02264 protein kinase family protein contains ... 30 1.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 30 1.3
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy... 28 5.3
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei... 28 7.1
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei... 28 7.1
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 7.1
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 7.1
At5g40450.1 68418.m04905 expressed protein 27 9.3
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 9.3
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 55.6 bits (128), Expect = 3e-08
Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Frame = -1
Query: 708 GFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPANTSWESGASALEH 538
G AK F +++ EEREHA KL++Y RG KL V L + + +E
Sbjct: 131 GLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSEFE---HVDKGDALYGMEL 187
Query: 537 ALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDK 358
AL LE V + + + S ND HL D++ EFL EQ + + ++ + L+++
Sbjct: 188 ALSLEKLVNEKLLN-LHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKG 246
Query: 357 HAALGEFIFDKKLL 316
H G + F++ LL
Sbjct: 247 H---GTWHFNQMLL 257
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 54.4 bits (125), Expect = 7e-08
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Frame = -1
Query: 708 GFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSVTDLITYRAPANTSWESGASALEH 538
G AK F +++ EEREHA L++Y RG KL V + P A+E
Sbjct: 129 GLAKFFKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQSEFDHPEK---GDALYAMEL 185
Query: 537 ALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDK 358
AL LE V + + + S +D L D++ FL+EQ + + ++ S L+++
Sbjct: 186 ALSLEKLVNEKLLN-LHSVASKNDDVQLADFIESVFLNEQVEAIKKISEYVSQLRRLGKG 244
Query: 357 HAALGEFIFDKKLLG 313
H G + FD++LLG
Sbjct: 245 H---GTWHFDQELLG 256
>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
subunit cowpea2 precursor GI:2970654 (Vigna
unguiculata); contains Pfam profile PF00210:
Ferritin-like domain
Length = 253
Score = 54.4 bits (125), Expect = 7e-08
Identities = 40/131 (30%), Positives = 64/131 (48%)
Frame = -1
Query: 708 GFAKLFFDAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALK 529
GFAK F D++ EER HA ++Y RG + L+ + A+E AL
Sbjct: 123 GFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKLQSILMPVSEFDHEEKGDALHAMELALS 182
Query: 528 LESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAA 349
LE +TN +++ ND LVD++ EFL EQ + + ++ + L+++ H
Sbjct: 183 LEK-LTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGH-- 239
Query: 348 LGEFIFDKKLL 316
G + FD+ LL
Sbjct: 240 -GVWHFDQMLL 249
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 32.3 bits (70), Expect = 0.33
Identities = 31/106 (29%), Positives = 42/106 (39%)
Frame = -3
Query: 634 HEGQADRLRNRPHHVQGPRQHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLQRLPP 455
H+G N PHH Q P+ H V R+ + R RHQ P + + E P
Sbjct: 21 HQGGPSSSWNSPHHHQIPQAHSVAPPRVKIKTRG-----RHQTEP--PETIHESPSSRPL 73
Query: 454 GRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETP 317
+P R ARP + L P+E R P R + + TP
Sbjct: 74 PLRPEEPLPPRHNPNSARPLQ--LSPEEQ----RPPHRGYGSEPTP 113
>At2g19410.1 68415.m02264 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 801
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -1
Query: 588 RAPANTSWESGASALEHAL-KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDE 421
R+P TS +S +E + +L++++ +++ + + CE F+ + V LS E+L+E
Sbjct: 297 RSPPETSRKSKKVEIEEEVERLKNELQSTVFKYKQACEELFSTQNKVKMLSTEYLNE 353
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 433 IPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPRIEHINILHVTPPLRSNP 263
+P R V P P+ PQ +D + P + P+ H +++H PP S P
Sbjct: 401 VPTRPVHKPQPPKES---PQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPP 454
>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
hypothetical protein F9F8.14 - Arabidopsis thaliana,
EMBL:AC009991
Length = 355
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 708 GFAKLFFDAATEEREHATKLIDY 640
GF K F D++ EER +A K ++Y
Sbjct: 323 GFTKFFNDSSLEERGYAEKFMEY 345
>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 294
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 561 SGASALEHALKLESDVTNSIREVIKTCESSFN 466
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 369
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 561 SGASALEHALKLESDVTNSIREVIKTCESSFN 466
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 466 RLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETP 317
R PP R +R R ++ P R R + P++ G A R R +P
Sbjct: 315 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSP 364
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 466 RLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETP 317
R PP R +R R ++ P R R + P++ G A R R +P
Sbjct: 322 RSPPRRSPIRRRSRSPIRRPGRSRSSSISPRKGRGPAGRRGRSSSYSSSP 371
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.5 bits (58), Expect = 9.3
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = -1
Query: 687 DAATEEREHATKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTN 508
D TEE EH + L + G LT T L T RA N S S S ++ E +
Sbjct: 2195 DYPTEEAEHGDETYSTLPVVGILTQLQTTLETERA-INDSASSEVSMIKEPADQEEKKGD 2253
Query: 507 SIREVIKTCESSF-NDYHLVDYLSGEFLD--EQYKGQRDLAGKASTLKKM 367
+V+++ E F +D L G+ E+ K + LAGK+ ++++
Sbjct: 2254 ---DVVESNEKDFVSDILEAKRLHGDKSGEAEKIKEESGLAGKSLPIEEI 2300
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -3
Query: 493 HQDLREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDDGQARRPRRVHLRQETPR 314
H L E + G + V ++T G R +RQ +D G+ RR + V + +TP
Sbjct: 938 HASLEESSKDELSGHVSVTS--KKTTGGGGR-KRQHIDDTATGGKRRRQQTVAVLPQTPG 994
Query: 313 IEHINI 296
H N+
Sbjct: 995 QRHYNL 1000
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,180,729
Number of Sequences: 28952
Number of extensions: 261807
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -