Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30915
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   2.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   4.0  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   5.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.1  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   7.1  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.3  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  LEIWRIENFEPVAVPKTQFGLFYSGDS 146
           L IW I+NFE +  P +   LF+S  S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 220  PARTKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NIS 348
            PA ++  ++PSS+ T     SR+Q  S   S + S +   N+S
Sbjct: 1251 PAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVS 1293


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 517 KMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLIVT 398
           K K+  +F      F   +   +LPL+++ + ++PSL VT
Sbjct: 476 KRKRKIIFIGFGEEFLTFSENLVLPLLFQIKIALPSLAVT 515


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 360 RYLKGGHASGFSHVTINEGTEKRLFQI---KGKRNVRVK--QVKPTFESLNNGDCFILDV 524
           RYL  GH++  S + +   +E + ++    K K  V  K   V    +  +N  C   ++
Sbjct: 496 RYLSNGHSATLSDLLLGILSEIKYYEYLVRKNKETVEEKWENVMELVQQSDNISCIFYEL 555

Query: 525 DHQIFVFV 548
           D++I   V
Sbjct: 556 DYKISTIV 563


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 148 TLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR 258
           T+Y  P A+ T  +GT+I  +   P        P SR
Sbjct: 187 TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSR 223


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 294 VQHREVQYYESKEFLEYFSPAIRYLKGGHASG 389
           +QH E++ Y  K  LEY        K G ++G
Sbjct: 865 IQHEEMKAYRRKNDLEYIDQHFASSKSGISNG 896


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 193 TSISGSARGPAR--TKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NISHQPSAI 366
           TS SGS+   A   +  A +PS++ +  + NS   +     SN+ S  SS     +P+A 
Sbjct: 215 TSTSGSSSNVAAEVSNDASQPSNQDS--SLNSNIVKPPLPPSNVQSNSSSSENVPKPNAE 272

Query: 367 *KADTPQASAT*RSMREQRNDS 432
            + D P   A   S+ E  NDS
Sbjct: 273 TQEDLPTIDAHESSLYENVNDS 294


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 523 TSKMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLI 404
           +SK+ Q   +KDS    TC T  F L L W SR  + + +
Sbjct: 756 SSKLDQFAFYKDSKQSSTC-TINFPLAL-WDSRLRIETKV 793


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 131 EETELSLRNGDRFEVLNPPYFE 66
           EE +L L++ +RF+V  P +FE
Sbjct: 457 EEMDLDLKSDERFKVDIPTFFE 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,355
Number of Sequences: 5004
Number of extensions: 56877
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)