Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30915
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 206 1e-53
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 204 5e-53
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 201 3e-52
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 193 7e-50
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 134 6e-32
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 29 2.6
At2g33420.1 68415.m04096 expressed protein 29 3.5
At5g45610.1 68418.m05605 expressed protein 28 4.6
At3g25590.1 68416.m03186 expressed protein 28 4.6
At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containi... 28 4.6
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ... 28 4.6
At5g10520.1 68418.m01218 protein kinase family protein contains ... 28 6.1
At5g29613.1 68418.m03639 hypothetical protein 27 8.1
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 27 8.1
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 27 8.1
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 206 bits (502), Expect = 1e-53
Identities = 108/204 (52%), Positives = 133/204 (65%), Gaps = 1/204 (0%)
Frame = +3
Query: 36 AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIHFWLG 212
AF AG+KPG EIWRIENFE V VPK++ G FY GD+YIVL TT +K +DIHFW+G
Sbjct: 9 AFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIG 68
Query: 213 SRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF 392
TSQDEAG AA+ TV L D G AVQHRE+Q +ES +FL YF P I L+GG ASGF
Sbjct: 69 KDTSQDEAGTAAVKTVEL-DAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGF 127
Query: 393 SHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVE 572
V E E RL+ KGKR +R+KQV SLN+ D FILD + +I+ F G + E
Sbjct: 128 KTVE-EEVFETRLYTCKGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNGANSNIQE 186
Query: 573 RMKAITVANQIKDQDHNGRADIEV 644
R KA+ V +KD+ H G D+ +
Sbjct: 187 RAKALEVVQYLKDKYHEGTCDVAI 210
Score = 72.1 bits (169), Expect = 3e-13
Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 11/192 (5%)
Frame = +3
Query: 66 LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRL-TWDIHFWLGSRTSQDEAGA 242
LE+W + +PK G YSGD Y+VL T +R + + W G ++ ++
Sbjct: 392 LEVWYVNGKVKTPLPKEDIGKLYSGDCYLVLYTYHSGERKDEYFLSCWFGKKSIPEDQD- 450
Query: 243 AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF-SHVTINEGT 419
AI N +G VQ R + E +F+ F P + LKGG +SG+ S + +E T
Sbjct: 451 TAIRLANTMSNSLKGRPVQGRIYEGKEPPQFVALFQPMV-VLKGGLSSGYKSSMGESEST 509
Query: 420 EK-------RLFQIKGK--RNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVE 572
++ L Q+ G N + QV+ SLN+ +CF+L +F++ G ++ +
Sbjct: 510 DETYTPESIALVQVSGTGVHNNKAVQVETVATSLNSYECFLLQSGTSMFLWHGNQSTHEQ 569
Query: 573 RMKAITVANQIK 608
A VA +K
Sbjct: 570 LELATKVAEFLK 581
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 204 bits (497), Expect = 5e-53
Identities = 107/208 (51%), Positives = 138/208 (66%), Gaps = 1/208 (0%)
Frame = +3
Query: 18 MPEVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKD-RLTWD 194
M ++ QA AG+K G+EIWRIENF+PV VP+ G F++GDSYIVL TT + L D
Sbjct: 5 MRDLDQALQGAGQKSGIEIWRIENFKPVTVPQESHGKFFTGDSYIVLKTTASRSGSLHHD 64
Query: 195 IHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKG 374
IH+WLG +SQDEAGA A++TV L D G AVQ+REVQ +E+++FL YF P I +G
Sbjct: 65 IHYWLGKDSSQDEAGAVAVMTVEL-DSALGGRAVQYREVQGHETEKFLSYFKPCIIPQEG 123
Query: 375 GHASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGE 554
G ASGF+HV E + RL+ KGK VRVK+V +LN+ D FILD + +IF F G
Sbjct: 124 GVASGFNHVKPEE-HQTRLYICKGKHVVRVKEVPFVRSTLNHEDVFILDTESKIFQFSGS 182
Query: 555 KAKGVERMKAITVANQIKDQDHNGRADI 638
K+ ER KA+ V IKD H+G+ DI
Sbjct: 183 KSSIQERAKALEVVQYIKDTYHDGKCDI 210
Score = 57.6 bits (133), Expect = 7e-09
Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Frame = +3
Query: 66 LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHFWLGSRTSQDEAGAA 245
L++WRI E + + + FYSGD YI+ + +DR + W G + S +E A+
Sbjct: 396 LQVWRINCEEKILLEAAEQSKFYSGDCYILQYSYPGEDREEHLVGTWFG-KQSVEEDRAS 454
Query: 246 AILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHV-------- 401
AI N E + Q R + E +F I + KGG + F
Sbjct: 455 AISLANKMVESMKFVPAQARINEGKEPIQFFVIMQSFITF-KGGVSDAFKKYIAENDIPD 513
Query: 402 TINEGTEKRLFQIKGK--RNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVG 551
T E LF+++G N++ Q++ LN+ C+IL D +F + G
Sbjct: 514 TTYEAEGVALFRVQGSGPENMQAIQIEAASAGLNSSHCYILHGDSTVFTWCG 565
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +3
Query: 426 RLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVA 596
+LF ++ + V+ T E L+ C+ILD ++FV+ G ++ +++ K+ T A
Sbjct: 255 KLFSVEKGQTDAVEAECLTKELLDTNKCYILDCGLELFVWKG-RSTSIDQRKSATEA 310
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 480 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQD 617
T + L D FILD ++FV+VG++ ++ +A+ + D
Sbjct: 645 TQDDLMTEDIFILDCHTEVFVWVGQQVDPKKKPQALDIGENFLKHD 690
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 201 bits (491), Expect = 3e-52
Identities = 106/204 (51%), Positives = 131/204 (64%), Gaps = 1/204 (0%)
Frame = +3
Query: 36 AFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIHFWLG 212
AF G+KPG EIWRIENFEPV VPK++ G FY GD+YIVL TT +K +DIHFW+G
Sbjct: 11 AFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWIG 70
Query: 213 SRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGF 392
TSQDEAG AA+ TV L D G AVQ+RE+Q +ES +FL YF P I L+GG ASGF
Sbjct: 71 KDTSQDEAGTAAVKTVEL-DAALGGRAVQYREIQGHESDKFLSYFKPCIIPLEGGVASGF 129
Query: 393 SHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVE 572
E E RL+ KGKR V +KQV SLN+ D FILD +I+ F G + E
Sbjct: 130 KKPE-EEEFETRLYTCKGKRAVHLKQVPFARSSLNHDDVFILDTKEKIYQFNGANSNIQE 188
Query: 573 RMKAITVANQIKDQDHNGRADIEV 644
R KA+ V +KD+ H G +D+ +
Sbjct: 189 RAKALVVIQYLKDKFHEGTSDVAI 212
Score = 72.5 bits (170), Expect = 2e-13
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Frame = +3
Query: 66 LEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLT-WDIHFWLGSRTSQDEAGA 242
LE+W I+ + K G YSGD Y+VL T +R + + W G ++Q++
Sbjct: 394 LEVWYIDANSKTVLSKDHVGKLYSGDCYLVLYTYHSGERKEDYFLCCWFGKNSNQEDQET 453
Query: 243 AAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGTE 422
A L + + +G VQ R + E +F+ F + LKGG +SG+ + +G+
Sbjct: 454 AVRLASTMTNS-LKGRPVQARIFEGKEPPQFVALFQHMV-VLKGGLSSGYKNSMTEKGSS 511
Query: 423 KR--------LFQIKGK--RNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVE 572
L Q+ G N + QV+ SLN+ DCF+L +F++VG + +
Sbjct: 512 GETYTPESIALIQVSGTGVHNNKALQVEAVATSLNSYDCFLLQSGTSMFLWVGNHSTHEQ 571
Query: 573 RMKAITVANQIK 608
+ A VA +K
Sbjct: 572 QELAAKVAEFLK 583
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 492 LNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQDHNGRA 632
L N C++LD +IF++VG + ER AI A ++ +A
Sbjct: 276 LENNKCYLLDCGSEIFIWVGRVTQVEERKTAIQAAEDFVASENRPKA 322
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 193 bits (471), Expect = 7e-50
Identities = 104/208 (50%), Positives = 130/208 (62%), Gaps = 1/208 (0%)
Frame = +3
Query: 18 MPEVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWD 194
M ++ AF AG+K G+EIWRIENF P +PK+ G F++GDSYIVL TT K L D
Sbjct: 5 MRDLDPAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTGALRHD 64
Query: 195 IHFWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKG 374
IH+WLG TSQDEAG AA+ TV L D G AVQ+REVQ +E+++FL YF P I +G
Sbjct: 65 IHYWLGKDTSQDEAGTAAVKTVEL-DAALGGRAVQYREVQGHETEKFLSYFKPCIIPQEG 123
Query: 375 GHASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGE 554
G ASGF HV E RLF +GK V VK+V SLN+ D +ILD +IF F G
Sbjct: 124 GVASGFKHVVAEEHI-TRLFVCRGKHVVHVKEVPFARSSLNHDDIYILDTKSKIFQFNGS 182
Query: 555 KAKGVERMKAITVANQIKDQDHNGRADI 638
+ ER KA+ V IKD H+G ++
Sbjct: 183 NSSIQERAKALEVVQYIKDTYHDGTCEV 210
Score = 60.9 bits (141), Expect = 7e-10
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 12/207 (5%)
Frame = +3
Query: 24 EVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHF 203
E Q F D L++WR+ + FYSGD Y+ + +++ I
Sbjct: 382 EEPQVFIDC--TGNLQVWRVNGQAKTLLQAADHSKFYSGDCYVFQYSYPGEEKEEVLIGT 439
Query: 204 WLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYF--SPAIRYLKGG 377
W G ++ ++E G+A V++ + + + + YE KE +++F + KGG
Sbjct: 440 WFGKQSVEEERGSA----VSMASKMVESMKFVPAQARIYEGKEPIQFFVIMQSFIVFKGG 495
Query: 378 HASGF----SHVTINEGTEKR----LFQIKGK--RNVRVKQVKPTFESLNNGDCFILDVD 527
+SG+ + +++ T LF+I+G N++ QV P SLN+ +IL D
Sbjct: 496 ISSGYKKYIAEKEVDDDTYNENGVALFRIQGSGPENMQAIQVDPVAASLNSSYYYILHND 555
Query: 528 HQIFVFVGEKAKGVERMKAITVANQIK 608
+F + G + ++ A + IK
Sbjct: 556 SSVFTWAGNLSTATDQELAERQLDLIK 582
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 480 TFESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQIKDQD 617
T + L D FI+D +IFV+VG++ ++ A+T+ + ++D
Sbjct: 643 TQDDLMTEDIFIIDCHSEIFVWVGQEVVPKNKLLALTIGEKFIEKD 688
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 134 bits (323), Expect = 6e-32
Identities = 75/206 (36%), Positives = 118/206 (57%), Gaps = 1/206 (0%)
Frame = +3
Query: 24 EVHQAFADAGRKPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDK-DRLTWDIH 200
++ AF G K GLEIW + N + +++PK+ FG F+SG++Y+VL T K + +DIH
Sbjct: 7 DIDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRTFLRKIESPQYDIH 66
Query: 201 FWLGSRTSQDEAGAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGH 380
+WLG ++ ++ A+ ++LD VQ+REVQ E+++FL YF P I ++G +
Sbjct: 67 YWLGIDANEVDSILASDKALDLD-AALGCCTVQYREVQGQETEKFLSYFKPCIIPVEGKY 125
Query: 381 ASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKA 560
+ E + L + KG VRVK+V SLN+ D FILD ++F+F G +
Sbjct: 126 SPKTG--IAGETYQVTLLRCKGDHVVRVKEVPFLRSSLNHDDVFILDTASKVFLFAGCNS 183
Query: 561 KGVERMKAITVANQIKDQDHNGRADI 638
E+ KA+ V IKD H+GR ++
Sbjct: 184 STQEKAKAMEVVEYIKDNKHDGRCEV 209
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 10/176 (5%)
Frame = +3
Query: 57 KPGLEIWRIENFEPVAVPKTQFGLFYSGDSYIVLNTTGDKDRLTWDIHFWLGSRTSQDEA 236
+ L++WR++ + + ++GD Y+V K+R ++ W+G + Q +
Sbjct: 388 RDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYLVQYKYTYKERTEHLLYVWIGCESIQQDR 447
Query: 237 GAAAILTVNLDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINE- 413
A AI + +G +V Q E F F + + KGG + + + +
Sbjct: 448 -ADAITNASAIVGTTKGESVLCHIYQGNEPSRFFPMFQSLVVF-KGGLSRRYKVLLAEKE 505
Query: 414 --GTE-----KRLFQIKG--KRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGE 554
G E LF++ G RN++ QV SLN+ +IL F ++G+
Sbjct: 506 KIGEEYNENKASLFRVVGTSPRNMQAIQVNLVATSLNSSYSYILQYGASAFTWIGK 561
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 486 ESLNNGDCFILDVDHQIFVFVGEKAKGVERMKAITVANQ 602
+ L C++LD ++FV++G ER +I+ + +
Sbjct: 275 DMLEKNKCYMLDCHSEVFVWMGRNTSLTERKTSISSSEE 313
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 29.1 bits (62), Expect = 2.6
Identities = 25/86 (29%), Positives = 38/86 (44%)
Frame = +1
Query: 58 SRVSKYGGLRTSNRSPFRRLSSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPARTKP 237
SRV + GL+ RSP RR+S+V + G + +P ++ G+ G P
Sbjct: 107 SRVKRALGLKMLKRSPSRRMSTVGTVVGAVSAPSSPGNNGSIGSGSGHFSPGAGFFTVPP 166
Query: 238 ARRPSSR*TWTTNNSRDQRYSTERSN 315
AR R + R Q TE+S+
Sbjct: 167 AR--PRRPLTSAEIMRQQMKVTEQSD 190
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 58 SRVSKYGGLRTSNRSPFRRLSSVSSTPGTPT 150
SRV + GL+ RSP RR+S++ + G T
Sbjct: 113 SRVKRALGLKMLKRSPSRRMSTIGAAGGAAT 143
>At5g45610.1 68418.m05605 expressed protein
Length = 633
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 134 VEETELSLRNGDRFEVLNPPYFETRLPA 51
++ E +L+ D + L PPY T LPA
Sbjct: 16 IDSIETTLKKADMYRPLPPPYLPTFLPA 43
>At3g25590.1 68416.m03186 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 384 SGFSHVTINEGTEKRLFQIKGK--RNVRVKQVKPTFESLNNGDCFILDVDHQI 536
S S V IN+ T+ F G+ R + +K+ + FE NN D ++LD ++ +
Sbjct: 121 SSSSCVEINKRTKNHRFSRIGRFFRKINLKKERD-FEKNNNNDSWVLDYNNDV 172
>At2g15980.1 68415.m01829 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 498
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 423 KRLFQIKGKRNVRVKQVKPTFESLNNGDCFILDVDHQIFVFVGEKAKGVE 572
K LF+ G + + + T+E L NG C DVD + V+ K KG E
Sbjct: 336 KELFRDMGLKGIECTCL--TYEHLVNGYCKAGDVDSGLVVYREMKRKGFE 383
>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
protein / PEP carboxylase family protein similar to
SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 1032
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 273 EQFQGSAVQHREVQYYESKEFLEYFSPA 356
E+ G + QH YE+ EFL YF A
Sbjct: 812 EEISGISCQHYRSTVYENPEFLSYFHEA 839
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 303 REVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGT 419
R Y E +YF+P KGGHA + V IN T
Sbjct: 139 RNFTYEELAVATDYFNPENMIGKGGHAEVYKGVLINGET 177
>At5g29613.1 68418.m03639 hypothetical protein
Length = 117
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 264 LDDEQFQGSAVQHREVQYYESKEFLEYFSPAIRYLKGGHASGFSHVTINEGTEKRLFQIK 443
LD Q Q H + ++ + F E F + A+G + + + +GT+ R +I
Sbjct: 21 LDGIQTQNGLQHHMSYKKFKDETF-EEFDDLKMVFEDNIATGGNAIGLGDGTDARTCEIA 79
Query: 444 GKR 452
GK+
Sbjct: 80 GKK 82
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 100 TGSKFSILHISRPGFLPASANA 35
+ +K S++ SRPGF P S+NA
Sbjct: 701 SANKNSVMSSSRPGFTPESSNA 722
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 306 EVQYYESKEFLEYFSPAIR-YLKGG-HASGFSHVTINEGTEKRLFQIKGKRNVRVKQVKP 479
E+ + E K P I Y GG S + +++G E+ ++ +KG +++V P
Sbjct: 307 EITHKEDKAEKPKTLPRIAMYCTGGIRCEKASSLLLSQGFEE-VYHLKGGILKYLEEV-P 364
Query: 480 TFESLNNGDCFILD 521
ESL G+CF+ D
Sbjct: 365 KTESLWEGECFVFD 378
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,358
Number of Sequences: 28952
Number of extensions: 306937
Number of successful extensions: 952
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -