Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30914
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 485 e-137
SB_56| Best HMM Match : Actin (HMM E-Value=0) 485 e-137
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 485 e-137
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 484 e-137
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 361 e-100
SB_54| Best HMM Match : Actin (HMM E-Value=0) 303 1e-82
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 277 6e-75
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 272 2e-73
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 206 1e-53
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 171 4e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 124 9e-29
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 110 9e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 105 3e-23
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 71 9e-13
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 4e-05
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 43 3e-04
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.003
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5) 32 0.40
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.2
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 29 4.9
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 8.6
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 8.6
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 485 bits (1197), Expect = e-137
Identities = 226/236 (95%), Positives = 233/236 (98%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 180
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 181 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 360
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 185
Query: 361 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 540
LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPD
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPD 245
Query: 541 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
GQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+S
Sbjct: 246 GQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 301
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 485 bits (1196), Expect = e-137
Identities = 226/236 (95%), Positives = 233/236 (98%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 180
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 181 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 360
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 361 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 540
LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPD 244
Query: 541 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
GQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+S
Sbjct: 245 GQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 300
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 485 bits (1195), Expect = e-137
Identities = 227/236 (96%), Positives = 233/236 (98%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 180
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 124
Query: 181 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 360
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct: 125 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
Query: 361 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 540
LTDYLMKILTERGYSFTTTAEREIVRDIKEKL YVALDFEQEMATAAAS+SLEKSYELPD
Sbjct: 185 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPD 244
Query: 541 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
GQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+S
Sbjct: 245 GQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 300
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 484 bits (1194), Expect = e-137
Identities = 225/236 (95%), Positives = 233/236 (98%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 180
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 181 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 360
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAI+RLDLAGRD
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLDLAGRD 185
Query: 361 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPD 540
LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+SLEKSYELPD
Sbjct: 186 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPD 245
Query: 541 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
GQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLYANTV+S
Sbjct: 246 GQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLS 301
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 361 bits (888), Expect = e-100
Identities = 171/186 (91%), Positives = 180/186 (96%)
Frame = +1
Query: 151 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 330
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 331 ILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAAST 510
I+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM TAA+S+
Sbjct: 138 IIRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSS 197
Query: 511 SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 690
SLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGMES GIHET YNSIMKCDVDIRKDLY
Sbjct: 198 SLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLY 257
Query: 691 ANTVMS 708
ANTV+S
Sbjct: 258 ANTVLS 263
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/26 (84%), Positives = 23/26 (88%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTF 78
LTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 65 LTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 303 bits (743), Expect = 1e-82
Identities = 137/217 (63%), Positives = 172/217 (79%)
Frame = +1
Query: 58 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 237
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 238 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 417
ASGRTTG V D GDGVSHTVP+Y+GY LPHA R+DLAGRDLT YL +++TERGYSF +T
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTERGYSFQST 2248
Query: 418 AEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQ 597
AE++I+RD+KE LCY A+D+E+E+ A S E Y LPDGQ I IG+ERFR E LFQ
Sbjct: 2249 AEQQIIRDLKETLCYCAMDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQ 2308
Query: 598 PSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
PS LG + GIHE+++ SI KCD+D+R +L+ N V+S
Sbjct: 2309 PSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLS 2345
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 277 bits (679), Expect = 6e-75
Identities = 150/238 (63%), Positives = 165/238 (69%), Gaps = 2/238 (0%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 180
LTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF
Sbjct: 66 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 125
Query: 181 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE--GYALPHAILRLDLAG 354
ETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE GY+ R +
Sbjct: 126 ETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYSFTTTAEREIV-- 183
Query: 355 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYEL 534
RD+ + L + + T A +++ E+ T + +
Sbjct: 184 RDIKEKLCYVALDFEQEMQTAASSS------------SIEKSYELPDGQVITIGNERFRC 231
Query: 535 PDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
P+ AL QPSFLGMES GIHET YNSIMKCDVDIRKDLYANTVMS
Sbjct: 232 PE---------------ALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMS 274
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 272 bits (667), Expect = 2e-73
Identities = 120/237 (50%), Positives = 167/237 (70%), Gaps = 1/237 (0%)
Frame = +1
Query: 1 LTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 177
L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++M
Sbjct: 68 LEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEVM 127
Query: 178 FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 357
FE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YEG+ALPH RLD+AGR
Sbjct: 128 FENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDIAGR 187
Query: 358 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELP 537
D+T YL+K++ RGY+F TA+ E VR +KEKLCYV + EQE A +T L + Y LP
Sbjct: 188 DITKYLIKLMLLRGYAFNHTADFETVRMMKEKLCYVGYNIEQEQKLALETTVLVEQYTLP 247
Query: 538 DGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
DG+V+ + ERF PEALFQP + +E G+ E ++N+I D+D R + Y + V+S
Sbjct: 248 DGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLS 304
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 206 bits (503), Expect = 1e-53
Identities = 97/106 (91%), Positives = 102/106 (96%)
Frame = +1
Query: 172 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 351
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYEGYALPHAILRLDLA
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDLA 60
Query: 352 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 489
GRDLTDYLMK++TERGYSFTTTAEREIVRDIKEKLCYVALDF QE+
Sbjct: 61 GRDLTDYLMKLMTERGYSFTTTAEREIVRDIKEKLCYVALDFYQEI 106
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 171 bits (417), Expect = 4e-43
Identities = 74/116 (63%), Positives = 101/116 (87%)
Frame = +1
Query: 106 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 285
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 286 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 453
SH+VPIYEG+A+PH+I+R D+AGRD++ YL +L + G+ F +++E EIVR IKE+
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRKEGHCFHSSSELEIVRTIKEE 241
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 124 bits (298), Expect = 9e-29
Identities = 55/70 (78%), Positives = 63/70 (90%)
Frame = +1
Query: 499 AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIR 678
A S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGME+ GIHE +YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 679 KDLYANTVMS 708
KDLY+N V+S
Sbjct: 65 KDLYSNCVLS 74
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 110 bits (265), Expect = 9e-25
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +1
Query: 217 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE- 393
Q LSLYASG T G+ L SG + IYEG+ L H + L++ G LT+ L + L +
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHLTENLKQYLRDQ 826
Query: 394 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 573
RG++FT+++ +IV DIKEK+CY++ D +E+ + L K Y LPDGQ+I+IG E
Sbjct: 827 RGHNFTSSSGWQIVNDIKEKICYLSKDHLKEVHNYKTNEGLTKFYTLPDGQMISIGYECI 886
Query: 574 RCPEALFQPSFL 609
E LF+P L
Sbjct: 887 SSMEPLFRPDLL 898
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 105 bits (253), Expect = 3e-23
Identities = 48/126 (38%), Positives = 80/126 (63%)
Frame = +1
Query: 16 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 195
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 196 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 375
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++GY L AI+R LAG +T
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFITAQC 122
Query: 376 MKILTE 393
++ E
Sbjct: 123 RQMFEE 128
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 70.9 bits (166), Expect = 9e-13
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Frame = +1
Query: 211 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 366
A +AVL+L AS RT TG V+DSGDGV+H +P+ EGY + I + +AGRD+T
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 367 DYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 492
++ ++L ER E + IKE+ Y+ D +E A
Sbjct: 100 FFVQQLLREREMGIPPEQSMETAKTIKERWGYICPDIAKEFA 141
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 550 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMS 708
+ + ERF PE F P F + + + E V N I C +D+R+ LY N V+S
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLS 249
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 45.6 bits (103), Expect = 4e-05
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 10 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 123
K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 253 TGIVLDSGDGVSHTVPI 303
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 42.7 bits (96), Expect = 3e-04
Identities = 45/184 (24%), Positives = 75/184 (40%), Gaps = 9/184 (4%)
Frame = +1
Query: 16 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 195
P + G + NWD ++IW +TF E + M +I+FE +N
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEILFEEYNF 331
Query: 196 PAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 357
A+ A LS Y S +V+D+G +H VP++ G + A+ R
Sbjct: 332 KALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVRR------ 385
Query: 358 DLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA---AASTSLEKSY 528
+ +L E +F ++ +KE CYV+ F ++M A ++ + Y
Sbjct: 386 -----QLHVLDE---TF-------VINQVKEDTCYVSSQFYKDMEIARQRGKENTIVREY 430
Query: 529 ELPD 540
LPD
Sbjct: 431 VLPD 434
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 61 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 240
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 241 SGRTTGIV 264
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 580 PEALFQPSFLGMESCGIHETV 642
PE +FQPS LG+E GI ET+
Sbjct: 3 PEIIFQPSMLGLEQAGITETM 23
>SB_49803| Best HMM Match : S-antigen (HMM E-Value=3.5)
Length = 257
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -3
Query: 429 FPLSGGGERVTPLGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGV----GDTISGVEH 262
F +SG + D H++ + +TS V+ + G + D + T S E
Sbjct: 134 FGISGTANTEEQIDVDKHQITNKASTSSVEKANTAGTTGGTQDQHATQGNKASTCSFEEA 193
Query: 261 DTGGTTGGVQ 232
+T GTTGG Q
Sbjct: 194 NTAGTTGGTQ 203
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 7 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 159
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +1
Query: 148 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 264
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 393 LGEDLHEVVGQVATSQVQTEDGVGQSVTFVDGYGVGDTISGVEHDTGG 250
L E + +V Q + GV S G+G G TISG D+GG
Sbjct: 1474 LQEAMMPIVSQQTCAAAMRRWGVVTSRMICGGFGAGSTISGCFGDSGG 1521
>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = -1
Query: 353 PAKSRRRMAWGRA*PS*MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELKVSNM 174
P+ + +W P T W +PSP+ T P ++T+W + +S++
Sbjct: 93 PSPQYKTTSWSLPLPQHKTTSWSSPSPKYKTTSWTSPSPQYKTTSWSSPLPQQTTFLSSL 152
Query: 173 IWVIFSLLALGLR 135
+I L + R
Sbjct: 153 YHIIGRLSGVHYR 165
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 336 EDGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 238
+DG G VDG GVGD G + D G GG
Sbjct: 9 DDGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 151 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 300
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 136 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 264
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 445 KEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPE 585
+EK+ L+ E E A + LEK +L + +G+ER RC +
Sbjct: 2983 REKIVTSDLESELETERALQANELEKQNKLLEKLSADLGHERSRCED 3029
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -1
Query: 302 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 126
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 125 VSSTGCSSGATRSSL*KVW 69
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,823
Number of Sequences: 59808
Number of extensions: 398662
Number of successful extensions: 1406
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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