Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30913
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22844| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)                 27   8.7  

>SB_22844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 436 PRPMVARSRADRVIIFSRFACCEYVSLN 519
           PRP+V  + AD V++  RFA   Y S+N
Sbjct: 190 PRPLVEVTEADLVLVAERFADKRYDSIN 217


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 442 VSACPRLAYAR*SSTSLDAFRTNQYSQNNPP 350
           VS  P   Y+  SST L A  TNQY Q   P
Sbjct: 848 VSCVPYSPYSTESSTELHAHLTNQYVQKKHP 878


>SB_17430| Best HMM Match : Kazal_1 (HMM E-Value=1e-07)
          Length = 396

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 164 HFILFKHN-PLRIYTL*IFTERTSLN*NDLNKDKLPYVDAFRSFFFSKDVLFLH 322
           HFIL +    L + T  +  E  + +  +  KD+L YV A  +++ + D  F+H
Sbjct: 67  HFILHRGRVTLELSTSDVKCELVTFSPKNFAKDRLVYVQASINYYNTPDQTFVH 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,378
Number of Sequences: 59808
Number of extensions: 313065
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)