Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30908
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.71
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 27 2.2
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.9
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 3.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.6
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.71
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y A Y PT + PTSP
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1639
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1653
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1709
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1716
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1723
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1696 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1730
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1703 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1710 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1744
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 378 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 479
S+S TSP P S +Y Y PT + PTSP
Sbjct: 1717 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = +1
Query: 361 PSLHRAHSPGHLLKVFP------SASITSPTRTD 444
PSLH+ GH ++V P + S+TSP D
Sbjct: 454 PSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNAD 487
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 340 VETPLLFPSLHRAHSPGHLLKV--FPSASITSPTRTDTSPLVMLSPLP 477
++TP PSL RA S H++KV P S+ + +T S + +LS P
Sbjct: 439 IQTPRS-PSLRRADSTSHIIKVPHLPDTSVKT-AKTGASEIDVLSRYP 484
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 27.5 bits (58), Expect = 2.2
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Frame = +3
Query: 186 APVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPV 365
AP + Y ++ + NP SY N GI A G+P G P VP
Sbjct: 99 APAAINNNFGYSYVGQSSQPVPSYNPLPSYNTASLPNAGIPAAMPGMP---SGYPGTVP- 154
Query: 366 VAQGSFS--WTSP--EGVPI-SVN---YVADENGYQPTGNAIPT 473
+ QG ++ ++SP G PI +VN + + QP N +P+
Sbjct: 155 IPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQPPAQPVNNVLPS 198
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 385 PGHLLKVFPSASITSPTRTDTSPLVMLSPLP-HQCLSRSLVLLPTSPRTF 531
P H+ + S+ + T+ D PLV SP P H + S+ S F
Sbjct: 392 PAHITSITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKPTQLSENVF 441
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 360 PVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIAKNIP-- 533
P + +F+ S VP S + A G + + T+PP P++ A + KNIP
Sbjct: 185 PFDSLNAFNEPSHSHVPNSASSTALSRGM--SNSVTLTAPPEPDEETIPTAIVIKNIPFS 242
Query: 534 LKK 542
LKK
Sbjct: 243 LKK 245
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 189 PVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVV 368
P VP V+ GA + P+ +Y+ +N+ A E GG PP+VP +
Sbjct: 540 PAPPVPSVNNA-GARLTLRDSGAAPEATYSLRQPSNH--AYSEGRSYTFTGGQPPSVPTM 596
Query: 369 AQGS 380
GS
Sbjct: 597 PYGS 600
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 348 PPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARA 506
PP P+ + S + S P SVN VA++ A P PP P + A
Sbjct: 908 PPPPPLPVKTSLNTFSH---PDSVNIVANDTSVAGVMPAFPPPPPPPPPLVSA 957
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,031
Number of Sequences: 5004
Number of extensions: 67685
Number of successful extensions: 224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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