Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30908
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 31 0.88
Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical pr... 29 2.7
U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 29 3.5
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 6.2
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 6.2
AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical ... 28 6.2
U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical pr... 28 8.2
U41277-4|AAA82475.1| 277|Caenorhabditis elegans Hypothetical pr... 28 8.2
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 575 NPKYVCEIYRLLLERNVLGDVGKSTSDLLRHWWGSGDSITSGLVSVLV 432
NPKY E Y + L D +ST+ + HW+ SIT+ +V V V
Sbjct: 7 NPKYGLENYSIFLPFETSFDAFRSTTWMQNHWY---QSITASVVYVAV 51
>Z81106-2|CAB03220.2| 468|Caenorhabditis elegans Hypothetical
protein R06C1.3 protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +3
Query: 348 PPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIAKN 527
PP P++ S P P ++ +V + + PT P PP P I+ A A A
Sbjct: 321 PPPPPLLMNTSIVHQLPAEAPSTIQFV-EPSAAPPTNIPPPPPPPPPMVISSAAASFAAP 379
Query: 528 IP 533
P
Sbjct: 380 AP 381
>U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical
protein C06E4.4 protein.
Length = 154
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 249 NEINPDGSYTYFYETNNGIAA-QEQGVPRNLGGNPPAVP 362
N +NP T F E G+++ Q Q N+G NP A+P
Sbjct: 98 NTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIP 136
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = +3
Query: 342 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARAL 509
G P PVV QG W+ + P A E PT A PP P Q A L
Sbjct: 70 GQDPTTPVVPQGGTGWSKSDN-PNG----AAEPPQTPTNQAPAVPPPPPPQPANDL 120
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 258 NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 434
N DG + F E G + G P L P+ ++ G +S +SP+ S +Y
Sbjct: 1535 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592
Query: 435 ENGYQPTGNAIPTSPPVPEQIARALAY 515
Y PT A SP P + +Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 258 NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 434
N DG + F E G + G P L P+ ++ G +S +SP+ S +Y
Sbjct: 1542 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599
Query: 435 ENGYQPTGNAIPTSPPVPEQIARALAY 515
Y PT A SP P + +Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626
>AF098985-5|AAC67418.1| 99|Caenorhabditis elegans Hypothetical
protein C08G5.5 protein.
Length = 99
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 396 PEGVP--ISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIA 521
P G+P +S +Y A PT P++PP+P + AY A
Sbjct: 44 PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAYSA 87
>U41535-3|AAB63403.2| 266|Caenorhabditis elegans Hypothetical
protein F18A1.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 623 QRQYCFHLFLFIRCKPNPKYVCEIYRLLLER 531
+ QYC H LF + + +Y+C +L ER
Sbjct: 96 KEQYCDHNKLFAKASSSVEYMCATKHVLFER 126
>U41277-4|AAA82475.1| 277|Caenorhabditis elegans Hypothetical
protein C06E4.3 protein.
Length = 277
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 249 NEINPDGSYTYFYETNNGIAAQE-QGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNY 425
N +NP T F+E+ G++ +E Q +G N A+P G PE + ++ +
Sbjct: 189 NTVNPGVVATGFHESCTGLSTEESQKFYDKVGANKSAIPCGFSG-----RPEHIAKAIAF 243
Query: 426 VADEN 440
+AD +
Sbjct: 244 LADRD 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,443
Number of Sequences: 27780
Number of extensions: 406694
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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