Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30907
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   5.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   5.3  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 308 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 391
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +2

Query: 308 YGVPDIDVFQTVDLWEKKDI--AQVVSTLF 391
           Y   D D+F    LW K +I  AQ + +L+
Sbjct: 116 YHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 498 PGKL*SVCKLDLTREPLNPDR 560
           PG   S CK+D+T  P +  R
Sbjct: 141 PGIFKSTCKIDITWFPFDDQR 161


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 180 LRTSSNSSPGGNLAPR 133
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 180 LRTSSNSSPGGNLAPR 133
           LR   + SPGGN  PR
Sbjct: 139 LRHKGDGSPGGNGGPR 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,871
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)