Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30907
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 50 2e-06
At2g47500.1 68415.m05929 kinesin motor protein-related 49 3e-06
At5g27000.1 68418.m03221 kinesin motor protein-related non-conse... 47 1e-05
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 44 1e-04
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 44 1e-04
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 44 1e-04
At5g41310.1 68418.m05020 kinesin motor protein-related 39 0.003
At5g35700.1 68418.m04269 fimbrin-like protein, putative similar ... 39 0.003
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 35 0.066
At2g04750.1 68415.m00485 fimbrin-like protein, putative similar ... 35 0.066
At3g44730.1 68416.m04814 kinesin motor protein-related similar t... 34 0.12
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 33 0.20
At5g55400.1 68418.m06902 fimbrin-like protein, putative similar ... 33 0.27
At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase fa... 31 1.1
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 30 1.9
At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-... 29 3.3
At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-... 29 3.3
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70... 29 4.4
At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identic... 28 5.8
At3g49210.1 68416.m05378 expressed protein 28 5.8
At5g67270.1 68418.m08480 microtubule-associated EB1 family prote... 28 7.6
At5g14570.1 68418.m01708 transporter, putative similar to trans-... 28 7.6
At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger) fa... 28 7.6
At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent phos... 28 7.6
At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent phos... 28 7.6
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos... 28 7.6
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 49.6 bits (113), Expect = 2e-06
Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Frame = +2
Query: 107 EAQEWIE---GVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPK--------- 238
EA W+ GV+G + P + E+ L+ G +LC ++N++KPG+VPK
Sbjct: 59 EAARWVRNTLGVVGGRDLPADPSEEDFRIALRSGILLCNVLNRVKPGAVPKVVEAPNDPL 118
Query: 239 INTTG---GQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFALGRET 409
+N G F+ EN+ NF ++ G+P F+ D + A++V + AL ++
Sbjct: 119 VNQDGAALSAFQYFENLRNFLVFVEEMGIP---TFEVSDFEKGGKSARIVECVLAL--KS 173
Query: 410 YRHAEWSG 433
YR + SG
Sbjct: 174 YREWKQSG 181
>At2g47500.1 68415.m05929 kinesin motor protein-related
Length = 974
Score = 49.2 bits (112), Expect = 3e-06
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Frame = +2
Query: 32 QSHNMSLERQVRAKIASKRNPEKEKEAQEWIE---GVLGAKFPPGELFEDVLK----DGT 190
Q H L ++ + EA W+ GV+GAK P E E+ L+ G
Sbjct: 24 QQHGNGLRDHDLVSRRAEEAASRRYEAANWLRRMVGVVGAKDLPAEPTEEGLRLGLRSGI 83
Query: 191 VLCQLINKLKPGSVPKI------------NTTGGQFKMMENITNFQSAIKAYGVPDIDVF 334
+LC+++NK++PG+V K+ F+ EN+ NF AI+ G P F
Sbjct: 84 ILCKVLNKVQPGAVSKVVESPCDAILVADGAPLSAFQYFENVRNFLVAIQEMGFP---TF 140
Query: 335 QTVDLWEKKDIAQVVSTLFAL 397
+ DL + + ++VV+ + A+
Sbjct: 141 EASDLEQGGNASRVVNCVLAI 161
>At5g27000.1 68418.m03221 kinesin motor protein-related
non-consensus AT donor splice site at exon 12;
non-consensus AC acceptor splice site at exon 13
Length = 987
Score = 47.2 bits (107), Expect = 1e-05
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Frame = +2
Query: 107 EAQEWIEGVLGA---KFPPGELFEDV----LKDGTVLCQLINKLKPGSVPKI-----NTT 250
EA W+ ++G K PGE E+ L+ G VLC ++NK+ PGSV K+ +
Sbjct: 49 EAAGWLRDMIGVSNGKDFPGEPSEEEFRLGLRSGIVLCNVLNKVNPGSVSKVVEAPDDVA 108
Query: 251 GG----QFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 397
G F+ ENI NF AI+ G+P F+ D+ + ++V+ + AL
Sbjct: 109 DGAALSAFQYFENIRNFLVAIEEMGLPS---FEASDMEKGGKSIRIVNCILAL 158
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 18/126 (14%)
Frame = +2
Query: 74 IASKRNPE---KEKEAQEWIEGVLGA----KFPPGELFEDVLKDGTVLCQLINKLKPGSV 232
+AS+R E + +A +W++ V+G P + F L++G +LC INK+ PG+V
Sbjct: 10 LASRRAEEAAARRFQAVQWLKSVVGQLGIPNQPSEKEFISCLRNGMILCNAINKIHPGAV 69
Query: 233 PKI----NTTGGQFKM------MENITNFQSAIKAYGVPDIDVFQ-TVDLWEKKDIAQVV 379
K+ + G++++ EN+ NF A++ +P + D E + +VV
Sbjct: 70 SKVVENYSYLNGEYQLPPAYQYFENVRNFLVALETLRLPGFEASDLEKDNLESGSVTKVV 129
Query: 380 STLFAL 397
+ L
Sbjct: 130 DCILGL 135
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 116 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 280
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 281 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 397
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = +2
Query: 116 EWIEGVLGAKFPPGELFED----VLKDGTVLCQLINKLKPGSVPKINTTGGQFKMME-NI 280
EW+ L P E ED L+DGTVLC L+N+L PGS+ GG F+ I
Sbjct: 47 EWLNETLPYLKLPWEASEDELRACLRDGTVLCSLLNQLSPGSM----RMGGSFEPASVKI 102
Query: 281 TNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVVSTLFAL 397
F +A+ +P F+ D+ E+ D+ V+ +L AL
Sbjct: 103 ERFLTAMDEMALPR---FEVSDI-EQGDMVPVLQSLKAL 137
>At5g41310.1 68418.m05020 kinesin motor protein-related
Length = 961
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +2
Query: 89 NPEKEKEAQEWIEGVLGAKFPPGELFEDVLK----DGTVLCQLINKLKPGSVPKINTTGG 256
N + + EW+ L P E E+ L+ DGTVLC L+N+L PGS+ GG
Sbjct: 39 NKQGHQSLVEWLNETLPYLNLPWEASEEELRACLVDGTVLCNLLNQLSPGSM----RMGG 94
Query: 257 QFKM-MENITNFQSAIKAYGVP 319
F+ NI F +A+ +P
Sbjct: 95 SFEPGCVNIERFLAAMDEMTLP 116
>At5g35700.1 68418.m04269 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893, fimbrin [Schizosaccharomyces pombe]
GI:3057144; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 687
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +2
Query: 149 PPGELFEDVLKDGTVLCQLINKLKPGSVPK--INT--TGGQFKMMENITNFQSAIKAYGV 316
P F D++KDG +LC+LIN PG++ + INT T ++ EN+T ++ KA G
Sbjct: 150 PATNAFFDLVKDGVLLCKLINVAVPGTIDERAINTKKTLNPWERNENLTLGLNSAKAIGC 209
Query: 317 PDIDV 331
+++
Sbjct: 210 TVVNI 214
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 34.7 bits (76), Expect = 0.066
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 158 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 325
+LFE V KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLFE-VAKDGVLLCKLINVAVPGTIDERAINTKSMLNPWERNENHTLCLNSAKAIGCTVV 214
Query: 326 DV 331
++
Sbjct: 215 NI 216
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 98 KEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLCQLINKLKPGSV 232
+EK + WI G+ + +FED L+DG +L Q ++K+ PG V
Sbjct: 396 EEKAFRFWINSFDGSVYI-NNVFED-LRDGWILLQTLDKVSPGIV 438
>At2g04750.1 68415.m00485 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 652
Score = 34.7 bits (76), Expect = 0.066
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Frame = +2
Query: 20 KALTQSHNMSLERQVRAKIASKRNPEKEKEAQEWIEGVLGAKFPPGELFEDVLKDGTVLC 199
K T + + S+ +A S N + E ++ L LF D++KDG +LC
Sbjct: 104 KTSTTTFHHSINESEKASYVSHINSYLKDEPN--LKSYLPINPTTNALF-DLVKDGVLLC 160
Query: 200 QLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDIDV 331
+LIN PG++ + INT ++ EN++ ++ KA G +++
Sbjct: 161 KLINIAVPGTIDERAINTKKELNPWERTENLSLCLNSAKAIGCTVVNI 208
>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
other kinesin-like proteins of A. thaliana: F02P16.12
(PID:g2191180), katA (D11371), katB (D21137), and katC
(D21138); contains non-consensus AT-AC splice sites at
intron 10
Length = 1087
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 149 PPGELFEDVLKDGTVLCQLINKLKPGSVPKI 241
P + F L++G +LC ++NK+ PGSV K+
Sbjct: 13 PSEDEFSLALRNGLILCNVLNKVNPGSVLKV 43
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 33.1 bits (72), Expect = 0.20
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 158 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 325
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 155 QLYE-LVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 213
Query: 326 DVFQTVDLWE 355
++ T DL E
Sbjct: 214 NI-GTQDLAE 222
>At5g55400.1 68418.m06902 fimbrin-like protein, putative similar to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893; contains Pfam profile PF00307: Calponin
homology (CH) domain
Length = 714
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +2
Query: 158 ELFEDVLKDGTVLCQLINKLKPGSVPK--INTTG--GQFKMMENITNFQSAIKAYGVPDI 325
+L+E ++KDG +LC+LIN PG++ + INT ++ EN T ++ KA G +
Sbjct: 156 DLYE-LVKDGVLLCKLINIAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVV 214
Query: 326 DVFQTVDLWE 355
++ T DL E
Sbjct: 215 NI-GTQDLAE 223
>At5g04980.1 68418.m00527 endonuclease/exonuclease/phosphatase
family protein contains similarity to inositol
polyphosphate 5-phosphatase I (GI:10444261) and II
(GI:10444263) [Arabidopsis thaliana]; contains Pfam
profile PF03372: Endonuclease/Exonuclease/phosphatase
family
Length = 437
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = -2
Query: 246 VLILG-TEPGFSLLMSWQRTVPSLRTSSNSSPGGNLAPRTPSIHSWASFSFSGLRLEAIL 70
VL+LG EP W + S+SS GG L+P+TPS + + F F+ L+ I
Sbjct: 57 VLVLGDNEPA----AKWLAMINQSLNKSSSSSGGRLSPKTPSFGAGSMF-FAKPSLKKIS 111
Query: 69 A--RT*RSRDM-LCDCVSAFXRVLR 4
RT R + +C+C + ++R
Sbjct: 112 ESFRTECRRKLKICNCSTFSEDIVR 136
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.9 bits (64), Expect = 1.9
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Frame = +2
Query: 62 VRAKIASKRNPEKEK---EAQEWIEGVLGAKF-----PPGELFEDVLKD--GTVLCQL-I 208
+R+ +ASKR E+ K EA EW+ G + ++F PGE+ V G Q+ +
Sbjct: 1043 LRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1102
Query: 209 NKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDIAQVV 379
N V N T G ++ E I N IK P + V+ T + + K+ A+ V
Sbjct: 1103 NTFHYAGVSAKNVTLGVPRLRE-IINVAKRIK---TPSLSVYLTPEASKSKEGAKTV 1155
>At5g02790.1 68418.m00221 In2-1 protein, putative similar to In2-1,
Zea mays, EMBL:X58573
Length = 235
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 410 YRHAEWSGPCLGPKPADECKRDFSDEVLKAGQTVIGLQAGSNKG 541
Y + GP L P+ D KR+F DE+LK T + S KG
Sbjct: 99 YLDNTFEGPSLYPE--DHAKREFGDELLKYTDTFVKTMYVSLKG 140
>At5g02780.1 68418.m00220 In2-1 protein, putative similar to In2-1
[Zea mays] EMBL:X58573
Length = 237
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 410 YRHAEWSGPCLGPKPADECKRDFSDEVLK-AGQTVIGLQAGSNKG 541
Y + + GP L P+ D KR+F +E+LK +T + GS KG
Sbjct: 101 YVDSNFDGPSLYPE--DSAKREFGEELLKYVDETFVKTVFGSFKG 143
>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein
GI:425194 [Spinacia oleracea]
Length = 650
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 71 KIASKRNPEKEKEAQEWIEGVL----GAKFPPGELFEDVLKDGTVLCQ-LINKLKPGSVP 235
KIASK + +K+ ++ I+ + G + + FED +K+ LC +I ++ G+ P
Sbjct: 563 KIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADEFEDKMKELESLCNPIIARMYQGAGP 622
Query: 236 KINTTGG 256
+ GG
Sbjct: 623 DMGGAGG 629
>At4g33650.1 68417.m04780 dynamin-like protein 2a (ADL2a) identical
to dynamin like protein 2a (ADL2a) [Arabidopsis
thaliana] GI:19032337; supported by cDNA gi:19032336
Length = 808
Score = 28.3 bits (60), Expect = 5.8
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Frame = -2
Query: 528 PACRPITVCPAFRTSSEKSRLHSSAGLGPR-------QGPLHSACL*VSRPRANSVLTTW 370
P RP RTSS S++ S + LG + QG + SA ++P AN+ T W
Sbjct: 551 PVARPKDTVEPDRTSSSTSQVKSRSFLGRQANGIVTDQGVV-SADAEKAQPAANASDTRW 609
Query: 369 AM-SFFSHRST--VWNTSMSGTPYA-LIADWKFVMFSIILNCPPVVL 241
+ S F T V S+ P++ + D + I L PP VL
Sbjct: 610 GIPSIFRGGDTRAVTKDSLLNKPFSEAVEDMSHNLSMIYLKEPPAVL 656
>At3g49210.1 68416.m05378 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 366 MSFFSHRSTVWNTSMSGTPYALIADWKFVM--FSIILNCPPVVLILGTEPGFSLLMSWQR 193
+SF+ H T S+ G P+AL ++ M +I L P V+ ++P LL W++
Sbjct: 445 ISFYGHPITYMAPSVYGHPHALTMHFQSYMNQMTISLTVDPTVI---SDP-HRLLDDWEK 500
Query: 192 TVPSLRTS 169
++ S++ +
Sbjct: 501 SLQSIKAA 508
>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
similar to SP|Q9UPY8 Microtubule-associated protein
RP/EB family member 3 (Protein EB3) {Homo sapiens};
contains Pfam profiles PF00307: Calponin homology (CH)
domain, PF03271: EB1 protein
Length = 329
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Frame = +2
Query: 185 GTVLCQLINKLKPGSVP--KIN-TTGGQFKMMEN 277
G V CQL++ + PG+VP K+N +++M++N
Sbjct: 40 GAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQN 73
>At5g14570.1 68418.m01708 transporter, putative similar to
trans-membrane nitrate transporter protein AtNRT2:1
[Arabidopsis thaliana] GI:3747058, high-affinity nitrate
transporter ACH1 [Arabidopsis thaliana] GI:3608362;
contains Pfam profile PF00083: Sugar (and other)
transporter
Length = 493
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +2
Query: 188 TVLCQLINKLKPGSVPKINTTGGQFKMMENITNFQSAIKAYGVPDIDVFQTVDLWEKKDI 367
+V Q + L G VP ++T ++ IT + A V +F D+ +++ I
Sbjct: 375 SVFVQAASGLVFGVVPFVSTRS--LGVVAGITGSGGTVGAV-VTQFLLFSGDDVRKQRSI 431
Query: 368 AQV--VSTLFALGRETYRHAEWSGPCLGPKPADECKRDFSDEVL 493
+ + ++ +FAL + +W G C GP + E + D S +L
Sbjct: 432 SLMGLMTFVFALSVTSIYFPQWGGMCCGPSSSSE-EEDISRGLL 474
>At5g07640.1 68418.m00875 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518 and a IBR domain,
Pfam:PF01485
Length = 316
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -2
Query: 564 RFCPD*VAPLLDPA---CRPITVCPAFRTSSEKSRLHSSAGLGPRQ 436
RFC D + D A +P+ CP+F +SE R L P+Q
Sbjct: 178 RFCFDCIKKQADVALEFAKPVVNCPSFGCNSELQREDCEGVLKPKQ 223
>At3g08590.2 68416.m00998 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 446 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 577
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At3g08590.1 68416.m00997 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 560
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 446 PKPADECKRDFSDE---VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 577
P PA + +D + ++KA T +GL + + G ++ G N LGAGR
Sbjct: 46 PTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 93
>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
phosphoglycerate mutase, putative /
phosphoglyceromutase, putative strong similarity to
SP|Q42908 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase (EC 5.4.2.1)
(Phosphoglyceromutase) {Mesembryanthemum crystallinum};
contains Pfam profile PF01676: Metalloenzyme superfamily
Length = 557
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +2
Query: 446 PKPA-DECKRDFSDE--VLKAGQTVIGLQAGSNKGATQSGQN-LGAGR 577
P PA D K D ++KA T +GL + + G ++ G N LGAGR
Sbjct: 44 PTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGR 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,011,922
Number of Sequences: 28952
Number of extensions: 390599
Number of successful extensions: 1131
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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