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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30906
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    33   0.064
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    31   0.26 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.60 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.60 
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    29   0.79 
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    29   0.79 
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    29   0.79 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    29   1.0  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    28   1.4  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   2.4  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.4  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.4  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   4.2  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   4.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   5.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   5.6  
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    26   5.6  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.4  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    26   7.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   7.4  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    26   7.4  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   9.8  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   9.8  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 32.7 bits (71), Expect = 0.064
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
 Frame = +1

Query: 385 ETYRALQEDGLPDAATEL--SAPVATKVFTAPTSKRP---APTPKPTKQ---SDAKPKGK 540
           ++ + ++E  +PD   E   SAP +TK   AP +K P   +P PKP K      +KPK  
Sbjct: 151 DSSKPIEEKPMPDLGAEQKESAPSSTK--PAPDAKEPEFSSPKPKPAKSEPVKQSKPKAT 208

Query: 541 QTTFVNSL--HEEHIQQSNSFKRL 606
           +T   +S   +E+ ++ +    R+
Sbjct: 209 ETARPSSFSRNEDRVKMNRMRLRI 232


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 409 DGLPDAATELSAPVATKVFTAPTSKRPAPTP-KPTKQSDAKPKGKQ-TTFVNSLHEEHIQ 582
           D +  +A+  +A     V T+P S    P P +P++Q     K    TTFV+S+H   +Q
Sbjct: 169 DSVSTSASSSNASNTVSV-TSPASSSATPLPNQPSQQQFLVSKNDAFTTFVHSVHNTPMQ 227

Query: 583 QS 588
           QS
Sbjct: 228 QS 229


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = +1

Query: 325  RQQTSPLP-PRPAAQYDPAKSETYRALQEDGLPDAATE----LSAPVATKVFTAPTSKRP 489
            RQ+ +P P P  +A   P  + T + +Q      A +     +SA ++T     PT + P
Sbjct: 1253 RQKGTPSPAPVNSATSTPVAAPTAQQIQPGKQASAVSSNVPAVSASISTPPAVVPTVQHP 1312

Query: 490  APTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNSFKRL 606
             PT +    +   P    T+F  +   +     N F ++
Sbjct: 1313 QPTKQIPTAAVKDPSTTSTSFNTAPIPQQAPLENQFSKM 1351



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +1

Query: 280  SPINLYSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATK 459
            +P+   +   + N+    ++P PP P +Q  PA            +        AP    
Sbjct: 1456 APVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAP 1515

Query: 460  VFTAPTSKRP-APTPKPTKQSDAKP 531
              T P S+   A  P P   +   P
Sbjct: 1516 SSTLPPSQSSFAHVPSPAPPAPQHP 1540


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +1

Query: 346 PPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDA 525
           PPRP A    + +    +  +  LP  ++ +SA        A   KRP P P P++++  
Sbjct: 271 PPRPIAPV--SMNPAINSTSKPPLPPPSSRVSAAAL-----AANKKRPPPPPPPSRRNRG 323

Query: 526 KP 531
           KP
Sbjct: 324 KP 325


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
 Frame = +1

Query: 100 VSNWP-YRTTPLVLPGAK-VRREPGPTESYLRHHP--NPAMRAPPNHDYRDTLMKQKVLH 267
           V N+P Y+T     P AK   +EP  +  Y       N + ++P  ++Y          H
Sbjct: 409 VRNYPFYQTNQGSNPPAKRFTQEPPSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFH 468

Query: 268 KQFNSPINLYSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYR 396
             +N  I  YS+ N       Q S  PP+    +DP  S+ YR
Sbjct: 469 PIYNDSIGYYSQANPQMYYANQVSAPPPQ--GSFDP-NSKFYR 508


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
 Frame = +1

Query: 277 NSPINLYSEQNIANSIRQQTSPLPPRPA-AQYDPAKSETYRALQEDGLPD--AATELS-- 441
           +S +NL ++ N AN +       P RP  ++  P  S +  AL  DG PD  AA  +   
Sbjct: 412 DSTVNL-NQPNYAN-LTPTPQVSPKRPTYSRSSPLPSASVPALG-DGSPDPPAAPSIQNS 468

Query: 442 --------APVATKVFTAPT-SKRPAPTPKPTKQSDAKPKGK 540
                    P  T+ +T P  S  P P  KP+++S+  PK K
Sbjct: 469 LSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKKK 510


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
 Frame = +1

Query: 367 YDPAKSETYRALQ--EDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKGK 540
           +DP +S+ +  ++  + G      EL       ++T P        P+PTK +    +G 
Sbjct: 265 FDPQESQLHSGMKPNDHGFGTDRFELYG----NLWTVPLDADVKALPEPTKITVPTVQGN 320

Query: 541 QTTFVNSLHEEHIQQSNSFKRLMFNVLGGHRILKMRRVTSFSA 669
              F +++ EE ++++N F      VL   +I++    +S S+
Sbjct: 321 YRDFYDAVFEEILKKANEFPIKSDQVLAVEKIMEAAYKSSESS 363


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
 Frame = +1

Query: 292 LYSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATEL-SAPVATKVFT 468
           L  E  +    +   +  PP P     P+K     A  +D LP  AT+L    +  K   
Sbjct: 510 LQDEGRLEIDAKSSKTNTPPSPLLVGTPSKESLKEASSDDELPVLATKLVDNVIKEKSPL 569

Query: 469 APTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQS 588
           + T K   P+ K T  +D K    +   VN L+   + +S
Sbjct: 570 SLTPKVVVPSHKET-YTDEKKLIDELDRVNPLNSSQLLRS 608


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 26/122 (21%), Positives = 42/122 (34%)
 Frame = +1

Query: 163 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSP 342
           P PT+SY +++  P          R     +K   K F  P     +  + +     ++P
Sbjct: 72  PHPTKSYQQYYQKPTGNTVDEDKSRVPDFSKK---KSFVPPKPAIPKGKVLSLGGNTSAP 128

Query: 343 LPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSD 522
              +P +                    + TE  AP  T   T   +  P P   PTK +D
Sbjct: 129 KSTKPISISLGGTKAPTTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKSAD 188

Query: 523 AK 528
           A+
Sbjct: 189 AE 190


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +1

Query: 217 PPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPP------RPAAQYDPA 378
           P N   + + + QK +HK+F+    L      + +  +  +PL P      R AAQ DPA
Sbjct: 552 PSNLSKKLSGLVQKKVHKKFDKDGRLKEISQFSKTTIKPETPLTPTTTPTPRTAAQEDPA 611

Query: 379 KSETYRALQEDG 414
           +  T      +G
Sbjct: 612 EETTDALASAEG 623


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 4/110 (3%)
 Frame = +1

Query: 277 NSPINLYSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELS---AP 447
           NS I   S ++ ++S  ++             P   E     Q D  P+   E S   +P
Sbjct: 242 NSSITKSSPRSSSSSNNERFKDTSEESIIFTSPNTPEHPSVYQTDITPEIKLEHSDNNSP 301

Query: 448 VATKV-FTAPTSKRPAPTPKPTKQSDAKPKGKQTTFVNSLHEEHIQQSNS 594
              ++ F  PTSK   P P    +S +  + +  + +N L  E+   SNS
Sbjct: 302 SKPEIPFRHPTSKPLPPKPLSRSKSSSLSRNQTRSQLNDLSAENDSTSNS 351


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/69 (27%), Positives = 25/69 (36%)
 Frame = +1

Query: 295 YSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKVFTAP 474
           YS  +      Q T+      AAQY  A       + +       T ++APVA      P
Sbjct: 336 YSTPSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVP 395

Query: 475 TSKRPAPTP 501
               PAP P
Sbjct: 396 VPP-PAPAP 403


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +1

Query: 376 AKSETYRALQED----GLPDAATEL-SAPVATKV-FTAPTSKRPAPTPKPTKQSDAKPKG 537
           A SE    LQ+D    G+P    EL +    +++  +  TS   +P P   +++  KP  
Sbjct: 416 AISEETEGLQDDEEYNGIPVDVNELLNVEFISQIPMSTETSSSSSPQPTEERKAKFKPSF 475

Query: 538 KQTTFVNSLHEEHIQ 582
            Q TFV+     H +
Sbjct: 476 TQGTFVSKRMRMHAE 490


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 286  INLYSEQ-NIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKV 462
            + +Y +Q  +A      T P+PP     + P  +  +R   ++GL     +L    A+ V
Sbjct: 862  MGVYEKQIQLAKRFNLPTPPVPPALCHAFPPGPNNPHREKTQEGLNKVLEDLETKKASDV 921


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 382 SETYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKP 531
           +E+ RA +E        E +  V+T  F  P      P P PT++   KP
Sbjct: 12  NESSRAYEEIFGAPRKREPARTVSTPAFMEPAPVSKKPLPPPTRRLPRKP 61



 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 112 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 273
           P    PL  P  ++ R+P P  S     P+    APP H  R+    + + H +
Sbjct: 44  PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +1

Query: 334 TSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTP-KPT 510
           ++P PP P ++  P  S    A     +P  +   + P+ +K    P+S  P   P  P 
Sbjct: 126 SAPAPPTPQSELRPPTS----APPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181

Query: 511 KQSDAKP 531
           K   + P
Sbjct: 182 KSPPSAP 188


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 603 PHVQCTWGTPNSKDATRDLLQRTNDCSMFLI 695
           P   C    P+S+D T ++ ++ +  SMFLI
Sbjct: 422 PRNFCQTAPPHSRDITENMQRKFSSMSMFLI 452


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 23/86 (26%), Positives = 32/86 (37%)
 Frame = -3

Query: 270 LVQHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFF 91
           L+ HL   + +   +  RCP   V V+    L   +    L S      G +   A NF 
Sbjct: 76  LLSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFL 131

Query: 90  FRMFRILVSVREEVGVERHCYTCRYG 13
            + FR  VS      V  HC +   G
Sbjct: 132 LQCFRSNVSSLRGQKVHEHCSSTEKG 157


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 16  IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 192
           IP SV  S   NF      Q+P      + S  P    P+     +V ++P P    + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218

Query: 193 HPNPAMRAPP 222
           + NP+  + P
Sbjct: 219 YYNPSATSKP 228


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +1

Query: 349  PRPAAQYDPAKSETYRALQEDGLPDAATELSAPVATKVFTAPTSKRPAPTP----KPTKQ 516
            PRP  Q  PA      A +   +P AA    AP+A  V TA  ++   P P    +P   
Sbjct: 986  PRPVVQNKPA------ATKPVSMP-AAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTT 1038

Query: 517  SDAKPKGKQTTFV 555
              A P    TT +
Sbjct: 1039 QAAAPVTSTTTTI 1051


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +1

Query: 295 YSEQNIANSIRQQTSPLPPRPAAQYDPAKSETYRALQEDGLPDAATELS 441
           ++   I+ S     SPL     AQ+DP+K    R++     P     LS
Sbjct: 377 FNSDQISESNNFNASPLSTPLKAQFDPSKPALNRSIDHQKTPQHKRYLS 425


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +3

Query: 120 HHSSRAPGS*GPKGAWPHRELPASSPQPSNEGTS*PRL--P*YPYETKGVAQAIQLSNQS 293
           HHS+    +   K ++ H  + +   +  +  TS PR      PY    V     L N+ 
Sbjct: 89  HHSTSNTPTKKKKDSFDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSVIDKEHLQNRV 148

Query: 294 ILGTEHCK--LYQA 329
            +GT H +  LYQ+
Sbjct: 149 SIGTTHTQNDLYQS 162


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 130 LVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQ 306
           L L GA V+R  P P      H  N A R   NH   +++  +     QF +P N  +  
Sbjct: 147 LELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHF 205

Query: 307 N 309
           N
Sbjct: 206 N 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,593
Number of Sequences: 5004
Number of extensions: 63064
Number of successful extensions: 244
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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