Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30906
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.21 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.36 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   5.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   5.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   5.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   5.9  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 430 TELSAPVATKVFTAPTSKRPAPTPKPTKQSDAKPKG 537
           T+   P+ T+    P+S  P P P P +   A  +G
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRG 37


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 337 SPLPPRPAAQYDPAKSETYRALQEDGLPDAATELSAPVAT-KVFTAPTSKRPAPTP 501
           S  PP+PA    P  S    + + D + D AT+ +A + + +   + T   P PTP
Sbjct: 335 SDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTP 390


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 601
           R +R      +R+RKE +R        +  N  IH+N
Sbjct: 57  RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 601
           R +R      +R+RKE +R        +  N  IH+N
Sbjct: 57  RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 601
           R +R      +R+RKE +R        +  N  IH+N
Sbjct: 57  RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 601
           R +R      +R+RKE +R        +  N  IH+N
Sbjct: 57  RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 93


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSN 601
           R +R      +R+RKE +R        +  N  IH+N
Sbjct: 290 RKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNN 326


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +2

Query: 491 RLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMY 619
           R  R R  S  RNR+  K+        N     +    SC  Y
Sbjct: 230 RYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRY 272


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +2

Query: 482 RGQRLHRNRRSSPTRNRKENKRPS*IHYTKNTFNSRIHSNASCSMY 619
           R  R +R       R+R+E +R        +  N  IH+N +   Y
Sbjct: 287 REYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNY 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,425
Number of Sequences: 438
Number of extensions: 4793
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)