Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30904
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 416 e-117
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 247 1e-66
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 231 5e-62
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 162 4e-41
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 89 7e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 78 1e-15
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 74 2e-14
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 68 1e-12
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 0.001
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.24
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.0
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 9.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 416 bits (1025), Expect = e-117
Identities = 194/211 (91%), Positives = 204/211 (96%)
Frame = +3
Query: 3 DSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 182
DSYVGDEAQSKRGILTLKYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPL 110
Query: 183 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 362
NPK+NREKMTQI+FETFN+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYA
Sbjct: 111 NPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 170
Query: 363 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 542
LPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TA
Sbjct: 171 LPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTA 230
Query: 543 AASTSLEKSYELPDGQVITIGNERFRCPEAL 635
A S+SLEKSYELPDGQVITIGNERFR PEAL
Sbjct: 231 AQSSSLEKSYELPDGQVITIGNERFRAPEAL 261
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 247 bits (604), Expect = 1e-66
Identities = 109/211 (51%), Positives = 156/211 (73%)
Frame = +3
Query: 3 DSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 182
D VGDEA++ R +L +KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+
Sbjct: 51 DVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPM 110
Query: 183 NPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 362
NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 111 NPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVV 170
Query: 363 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 542
L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + +
Sbjct: 171 LNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLS 230
Query: 543 AASTSLEKSYELPDGQVITIGNERFRCPEAL 635
+T L ++Y LPDG+VI +G+ER+ CPE L
Sbjct: 231 EETTVLMRNYTLPDGRVIKVGSERYECPECL 261
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 231 bits (566), Expect = 5e-62
Identities = 107/212 (50%), Positives = 149/212 (70%), Gaps = 1/212 (0%)
Frame = +3
Query: 3 DSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAP 179
D +VG EAQ+ RG+L ++ PIE GII NW DME+IW + + ++ L PEEHP+LLTE P
Sbjct: 55 DMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPP 114
Query: 180 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 359
L N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+
Sbjct: 115 LANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGF 174
Query: 360 ALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 539
++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ +
Sbjct: 175 SIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIES 234
Query: 540 AAASTSLEKSYELPDGQVITIGNERFRCPEAL 635
+Y+LPD Q IT+G E F PE L
Sbjct: 235 WTEHKPQIHTYQLPDNQTITLGTECFSAPEVL 266
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 162 bits (393), Expect = 4e-41
Identities = 94/224 (41%), Positives = 128/224 (57%), Gaps = 15/224 (6%)
Frame = +3
Query: 3 DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 179
D ++G++A K +L YPI HG I NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 180 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 335
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 336 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYV 509
+P+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ CYV
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYV 247
Query: 510 ALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPE 629
D +E + L+ + E G I +G ERF PE
Sbjct: 248 CPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPE 291
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 96.7 bits (230), Expect = 2e-21
Identities = 54/188 (28%), Positives = 98/188 (52%), Gaps = 3/188 (1%)
Frame = +3
Query: 12 VGDEAQSKRGILTL-KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 188
VG++ + G ++ + P E +I+NWD ME++ +TF +L + EHP+ +TE NP
Sbjct: 69 VGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
Query: 189 KANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYA 362
R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 128 TYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGER 187
Query: 363 LPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATA 542
+ R+ G + YL+K+ + SF + C+V+ D+ ++A A
Sbjct: 188 ILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIAHA 247
Query: 543 AASTSLEK 566
LE+
Sbjct: 248 LDRDILER 255
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.6 bits (210), Expect = 7e-19
Identities = 43/134 (32%), Positives = 69/134 (51%)
Frame = +3
Query: 45 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 224
+ +K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 225 ETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 404
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 405 LTDYLMKILTERGY 446
+ D L + L ++ +
Sbjct: 183 INDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.8 bits (183), Expect = 1e-15
Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 3 DSYVGDEAQSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEA 176
+ YV DE Q I + +K +GII +W+ W +L+V P E+ +++TE
Sbjct: 50 NKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEP 109
Query: 177 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 356
NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G + P+ +G
Sbjct: 110 SWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDG 169
Query: 357 YALPHAILRLDLAGRDLTDYLMKILTERGYSF 452
+ I + LAG L + ++ F
Sbjct: 170 LIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 32.7 bits (71), Expect = 0.046
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 447 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 626
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 627 EAL 635
E L
Sbjct: 300 EIL 302
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 73.7 bits (173), Expect = 2e-14
Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 38/247 (15%)
Frame = +3
Query: 9 YVGDEAQSKRGILTLKYPIEH--GIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 176
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 177 PLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTG--------------IVLD 314
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 315 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKE 494
SG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVNEIKE 220
Query: 495 KLCYVALDFEQEMATA--AASTSLEKSYELPD------------------GQVITIGNER 614
+CYV+ +F+++M + LE Y LPD QV+ + NER
Sbjct: 221 SVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNER 280
Query: 615 FRCPEAL 635
F PE L
Sbjct: 281 FMIPELL 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 67.7 bits (158), Expect = 1e-12
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Frame = +3
Query: 60 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 227
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 228 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 407
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 408 TDYLMKILTERGYSFTTTAEREIVRDIKE 494
T +L +L E + ++ + DI E
Sbjct: 232 TQHLQNLLRESLPTLKSSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 37.9 bits (84), Expect = 0.001
Identities = 28/146 (19%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Frame = +3
Query: 51 LKYPIEHGIITNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 194
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 195 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 374
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 375 ILRLDLAGRDLTDYLMKILTERGYSF 452
++++ G D+T MK+L + +
Sbjct: 318 RIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 120 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 263
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 346 STKVTLCPTPSSVWTW 393
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 162 LLTEAPLNPKANREKMTQIMFETFN 236
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 347 LRRLRSAPRHPPSGLGWSRLDRLPHED 427
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,245,161
Number of Sequences: 5004
Number of extensions: 41144
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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