Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30901
         (758 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.36 
UniRef50_Q3WB00 Cluster: Extracellular solute-binding protein, f...    34   3.3  
UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;...    33   5.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.5 bits (83), Expect = 0.36
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 111 AGWWHSPARTHKRSYHQ 161
           A WW+ PARTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q3WB00 Cluster: Extracellular solute-binding protein,
           family 5 precursor; n=1; Frankia sp. EAN1pec|Rep:
           Extracellular solute-binding protein, family 5 precursor
           - Frankia sp. EAN1pec
          Length = 511

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 425 RHAIMDVVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK*HPLLCILFY 246
           R AI  V DRD   + L +   +  Y  F+  + AYI  +AD Y +  TK   L+    Y
Sbjct: 295 RQAINMVFDRDAMVKNLYQGHGKPAYQIFRPGSDAYIDGMADPYPFDVTKAKALMAEAGY 354

Query: 245 YRNFN 231
              F+
Sbjct: 355 ASGFD 359


>UniRef50_A6W593 Cluster: Transcriptional regulator, TetR family;
           n=1; Kineococcus radiotolerans SRS30216|Rep:
           Transcriptional regulator, TetR family - Kineococcus
           radiotolerans SRS30216
          Length = 222

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 25  KKVLR--SQV*LQRLPHPSNRNALLLHGRNRQGGGTHPRGLTRG 150
           + VLR  +Q  L  LP P  R A    G  R GGGT P G +RG
Sbjct: 178 ESVLREAAQAALDGLPRPPGRAAGPARGTTRSGGGTRPGGGSRG 221


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,070,030
Number of Sequences: 1657284
Number of extensions: 13021930
Number of successful extensions: 26912
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26911
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62969581935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)