Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30901
         (758 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   3.0  
12_01_0620 + 5109756-5109758,5110016-5110255,5110264-5110653,511...    28   7.0  
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743     28   7.0  
06_03_0161 - 17369081-17369670,17370745-17370760,17370974-173717...    28   9.3  
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296     28   9.3  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 67  HPSNRNALLLHGRNRQGGGTHPRGL 141
           H ++    LL GR R GGG H RGL
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGL 306


>12_01_0620 +
           5109756-5109758,5110016-5110255,5110264-5110653,
           5110723-5110995
          Length = 301

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 370 RRKYSVELSRSTTSIIAWRRIPYIT*IKHKVLP 468
           R++ +VELS ST++   WRR P +    +K  P
Sbjct: 186 RKRKAVELSTSTSACQTWRRSPPVKKAPNKTNP 218


>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
          Length = 105

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 204 VTSLTECRCIPLGFTGGRTSC 142
           +T  + CRC+P G  G R +C
Sbjct: 68  LTCCSACRCVPAGTAGNRETC 88


>06_03_0161 -
           17369081-17369670,17370745-17370760,17370974-17371754,
           17371871-17371972,17372078-17372397
          Length = 602

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 434 GIRRHAIMDVVDRDNSTEYLRR 369
           GI+R  + +++ R++ TEYLRR
Sbjct: 29  GIQRGVLREILSRNSGTEYLRR 50


>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
          Length = 191

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 404 VDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRY 288
           VD ++ TE LRR       +E +T +A  + RVA + +Y
Sbjct: 49  VDSNDLTEKLRRKVGHAEVVELRTVDADELMRVAAANQY 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,424,718
Number of Sequences: 37544
Number of extensions: 353076
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)