Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30901
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7115| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.14 
SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               31   1.3  
SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)           28   9.5  

>SB_7115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYIT 282
           V   DN+  Y+ R+EN  +Y+    +   Y+TR+ ++  Y+T
Sbjct: 64  VTRADNTRIYVTRAENTRIYVTHADNTQIYVTRIKNTRIYVT 105



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYIT 282
           V   DN+  Y+ R+E   +Y+    +   Y+TR  ++  Y+T
Sbjct: 14  VTRADNTRIYVTRAEYTRIYVTRAENTRIYVTRAENTRIYVT 55



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYIT 282
           V   +N+  Y+ R+EN  +Y+        Y+TR  ++  Y+T
Sbjct: 34  VTRAENTRIYVTRAENTRIYVTRAEYTRIYVTRADNTRIYVT 75



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 392 NSTEYLRRSENQTVYIEFKTSNAAYITRVADS 297
           N+  Y+ R+EN  +Y+ +  +   Y+TR+ ++
Sbjct: 99  NTRIYVTRAENTQIYVTYADNTQIYVTRIENT 130



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYIT 282
           V   +N+  Y+ R++N  +Y+        Y+TR  ++  Y+T
Sbjct: 4   VTRTENTRIYVTRADNTRIYVTRAEYTRIYVTRAENTRIYVT 45


>SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 287 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 330



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 297 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 340



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 307 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 350



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 317 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 360



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 327 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 370



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 337 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 380



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 347 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 390



 Score = 31.9 bits (69), Expect = 0.58
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 357 ITRKRGQTPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 400



 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = -1

Query: 386 TEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           T Y+ R   QT YI  K     YITR      YIT K
Sbjct: 284 TPYITRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 320



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -1

Query: 407 VVDRDNSTEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           +  +   T Y  R   QT YI  K     YITR      YIT K
Sbjct: 267 ITKKRGQTPYTTRKRGQTPYITRKRGQTPYITRKRGQTPYITRK 310



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 386 TEYLRRSENQTVYIEFKTSNAAYITRVADSYRYITTK 276
           T Y+ +   QT Y   K     YITR      YIT K
Sbjct: 264 TPYITKKRGQTPYTTRKRGQTPYITRKRGQTPYITRK 300


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 19  KIKKVLRSQV*LQRLPHPSNRNALLLHGRNRQ 114
           K  + LR Q  +QR P P+ RN++ LHG   Q
Sbjct: 19  KRSQALRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)
          Length = 674

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 240 EF*REPSYQY*QVTSLTECRCIPLGFTGGRTSCESARVSA 121
           +F REP      V   + C+C   G   G+TSC  ARVS+
Sbjct: 282 DFFREPGKSLSAVDVCSPCQCTGPGVETGKTSC--ARVSS 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,317,950
Number of Sequences: 59808
Number of extensions: 451686
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)