Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30900
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.4  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.4  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 671 HVDIPYNILNTDNPLFYTNNII 736
           ++DI +NI      LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 671 HVDIPYNILNTDNPLFYTNNII 736
           ++DI +NI      LFYT NII
Sbjct: 231 YLDITFNITMRRKTLFYTVNII 252


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 671 HVDIPYNILNTDNPLFYTNNII 736
           ++DI +NI      LFYT N+I
Sbjct: 227 YLDITFNITMRRKTLFYTVNLI 248


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 653 PARASSHVDIPYNILNTDNPLFYTNNII 736
           P     + DI +NI      LFYT N+I
Sbjct: 230 PCCTEPYSDITFNITMRRKTLFYTVNLI 257


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 474 PEEGHGVEDITTRHIFSYKIVT 539
           P EG  + D   RHI    I+T
Sbjct: 364 PSEGEDISDYKFRHITEITILT 385


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 677 DIPYNILNTDNPLFYTNNII 736
           DI +NI      LFYT N+I
Sbjct: 225 DIVFNITLRRKTLFYTVNLI 244


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 328 SCHTASDIPGNLHTLPGLCLSLLG 257
           S  T  ++   LHT+  +C+  +G
Sbjct: 15  SAMTLDELKSGLHTVQSVCMKEIG 38


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 677 DIPYNILNTDNPLFYTNNII 736
           DI Y I     P+FY  N+I
Sbjct: 202 DITYEIRLRRRPMFYVFNLI 221


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 653 PARASSHVDIPYNILNTDNPLFYTNNII 736
           P     + DI +NI      LFYT N+I
Sbjct: 216 PCCDEPYPDIFFNITLRRKTLFYTVNLI 243


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 203 QRRRARSCSHSKSSFPSTAKQRKTKTRER 289
           +R+R  S   ++S   S A   KTK R +
Sbjct: 215 KRKRKSSTIENESETESNASSTKTKMRRK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,752
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)