Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30899
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 49 2e-06
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 42 2e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.001
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.004
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 36 0.020
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.035
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.047
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.062
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 34 0.082
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.11
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.14
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 33 0.14
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19) 32 0.25
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13) 31 0.58
SB_59520| Best HMM Match : RMMBL (HMM E-Value=6.4e-18) 31 0.58
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 30 1.0
SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3) 30 1.0
SB_49766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00033) 30 1.3
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 29 2.3
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 29 3.1
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 28 5.4
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 28 5.4
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 27 7.1
SB_54554| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_52808| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_47515| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_36229| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_20592| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_17452| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_2129| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_36062| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_32612| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_10785| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_8664| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 27 9.4
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 52.4 bits (120), Expect = 2e-07
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFD 289
PP N+ +YI+NL KI EE+ Y IF ++G I I T + RG AFVV++DI
Sbjct: 4 PP--NQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGS 61
Query: 290 AKNACDHLSGFNVCNRYLVVLY 355
A NA + GF ++ + + Y
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQY 83
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
LY+ NL + E+ F K+G + ++ V P G AFV YED DA+ A L G
Sbjct: 6 LYVGNLGRNADSSELERAFEKFGRLSKVWVARNPP--GFAFVEYEDYRDAEEAVRELDGA 63
Query: 323 NVCNRYLVV 349
NVC+R + V
Sbjct: 64 NVCDRTIRV 72
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Frame = +2
Query: 116 RLPPEVNRI--LYIRNLPYKISAEEMYDIFGKYGAIRQI---RVGNTPETRGTAFVVYED 280
R PPE++ + L + NL Y+ + E++ +F KYG + I R NT E+RG AFV + +
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 281 IFDAKNACD 307
DA++A D
Sbjct: 67 KRDAEDAMD 75
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQI---RVGNTPETRGTAFVVYEDIFDAKNA 301
+Y+ NLPY ++ +++ +F +YG + ++ R T E+RG AF+++ D A+NA
Sbjct: 12 VYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNA 67
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +2
Query: 128 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQ----IRVGNTPETRGTAFVVYEDIFDAK 295
+V L+I NL ++ + +YD F +G I Q +R +T ++G AF+ + FDA
Sbjct: 97 DVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFAS-FDAS 155
Query: 296 NAC-DHLSGFNVCNRYLVVLY 355
+A + ++G +CNR + V Y
Sbjct: 156 DAAIEAMNGQYLCNRPITVSY 176
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACD 307
R +++ N+PY+ S E++ +IF + G + R+ T + +G F Y+D A +A
Sbjct: 25 RSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMR 84
Query: 308 HLSGFNVCNRYLVV 349
+L+G+ + R L V
Sbjct: 85 NLNGYELNGRALRV 98
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
+YI +L S E+ + FG YG ++ + V P G AF +++D DA++A L G
Sbjct: 34 VYIGSLGDNASKREIENEFGYYGPLKDVWVARNPP--GFAFCIFDDRRDAEDAVRELDGR 91
Query: 323 NVCNR 337
+C +
Sbjct: 92 YICGQ 96
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT-AFVVYEDIFDAKN 298
P E NR LY+ NL K + E + IF K + + ++ N+P +G FV +E DA+
Sbjct: 364 PEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGPYCFVEFETHADAQE 423
Query: 299 ACDHLSGFNVCNRYLVVLYYRSNKAFK 379
A + V ++ L V + ++ K
Sbjct: 424 AKFRMDQRTVMDKKLKVNWATNHPGMK 450
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 128 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
++N +Y+ NLP + E+ +F +YG+I + +V
Sbjct: 612 QLNTTVYVGNLPPDVKDYELQQMFSQYGSILETKV 646
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
+YI N+ S E+ F +G +R + V P G AF V+ED DA++A L G
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNPP--GFAFCVFEDRRDAEDAVRELDGR 61
Query: 323 NVCNR 337
+C +
Sbjct: 62 YICGQ 66
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT-AFVVYEDIFDAKNA 301
+Y+ NLP + ++++DIF KYG I + + N AFV +ED DA++A
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDA 316
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
L++ NLP+ E+ ++F K+G ++Q+R+ + +G +V YE A A L
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 317 GFNVCNRYLVV 349
V R + V
Sbjct: 233 KTEVKGRTISV 243
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 35.9 bits (79), Expect = 0.020
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNA 301
R +YIR+ I + +FG YGAI + + T +++G +V YE+ A+ A
Sbjct: 63 RTIYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSKGFGYVTYENAESAQRA 119
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 35.9 bits (79), Expect = 0.020
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVY---EDI 283
PPE +L++ NLP++ + + D+ YG I + +R T +++G FV Y E+
Sbjct: 110 PPE--SLLFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENA 167
Query: 284 FDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKY 433
AK + + + R L V + SN D+ + +D L + +
Sbjct: 168 MQAKQQLLNTASKYIGGRILRVAFAESN-LLTYADVHSRTLFVDRLPRDF 216
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.1 bits (77), Expect = 0.035
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
PP N L +RNL Y + + + F + I + E+RG FV Y+D+ AK
Sbjct: 286 PP--NSSLIVRNLSYDTTTDSLGAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKV 343
Query: 302 CDHLSGFNVCNR 337
++G V R
Sbjct: 344 LSEMAGAEVDGR 355
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.047
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +2
Query: 104 RANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQI-----RVGNTPETRGTAFV 268
R R P LY+ +L ++ + + +IF YG ++ + R N +RG A+V
Sbjct: 1146 RRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNL--SRGFAYV 1203
Query: 269 VYEDIFDAKNACDHLSGFNVCNRYLVV 349
Y D + + A H+ G + + + V
Sbjct: 1204 EYVDPEECEKALKHMDGGQIDGQEIAV 1230
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 34.3 bits (75), Expect = 0.062
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAI---RQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
LY+ N+P ++ E F YG I R +R +T +G FV+Y+ +A+ A L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 314 SG 319
SG
Sbjct: 195 SG 196
Score = 33.9 bits (74), Expect = 0.082
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
LY+ N+ Y + E + +FG+ G + ++ + + +G FV +A+NA L
Sbjct: 277 LYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTL 336
Query: 314 SGFNVCNRYL 343
+GF N+ L
Sbjct: 337 NGFMYTNKPL 346
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 34.3 bits (75), Expect = 0.062
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
+Y++N + E+M +I + G I ++V PE ++G FV +E +A+ A + L+
Sbjct: 111 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVLN 170
Query: 317 GFNVCNRYLVV--LYYRSNKAFK-GIDIDKKQEE 409
G + R L R+ +A + +I+KK++E
Sbjct: 171 GKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQE 204
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
LYI+NL I E + + F YG I +V + ++G FV + +A A ++
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDKGNSKGFGFVCFSSPEEATKAVTEMN 273
Query: 317 GFNVCNRYLVV 349
G + ++ L V
Sbjct: 274 GRILISKPLYV 284
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 33.9 bits (74), Expect = 0.082
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSG 319
+Y+RN+P +S ++ +F KYG I ++R + R FV + A A D ++G
Sbjct: 4 IYVRNVPLPMSETQLKAVFTKYGQIEKVR-----KIRDYGFVYFAKRESAVQAIDGING 57
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYG-----AIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 307
L IRNL + + + + F +G ++ Q +VG G FV + ++FDA A +
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 308 HLSGFNVCNRYLVV 349
++ + R + V
Sbjct: 309 EMNAKKILGRPVAV 322
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV----GNTPETRGTAFVVYEDIFDAKNACDH 310
+++RNLPY I+ E F + G +++ + N RG +V + DA A D+
Sbjct: 22 IFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKAKDN 81
Query: 311 L 313
+
Sbjct: 82 I 82
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +2
Query: 131 VNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 310
+N +Y+ LPY + +++ F YG +R I + N FV +ED DA +A
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYGRLRDINLKN-----NYGFVEFEDDRDADDAVYE 55
Query: 311 LSGFNVCNRYLVVLYYR 361
+G + ++V + R
Sbjct: 56 CNGKEMLGERILVEHSR 72
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDA 292
+PP + ++ +P + +E+ +F G I ++R+ + RG AFVVY DA
Sbjct: 69 IPPRGCEV-FVGKIPRDLYEDELVPVFETAGPIYEVRLMMDFNGQNRGYAFVVYTSKDDA 127
Query: 293 KNACDHLSGFNV 328
K L+ + +
Sbjct: 128 KRCVKTLNNYEI 139
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKN 298
L + LPY + EM + F ++G I V NT +RG FV ++ DAKN
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKN 171
>SB_58000| Best HMM Match : MATH (HMM E-Value=1.1e-19)
Length = 1451
Score = 32.3 bits (70), Expect = 0.25
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 389 IDKKQEEIDTLKKKYGISSEDLRK 460
I + +E++DTLKK+ GI+SE +RK
Sbjct: 1241 IHENKEQLDTLKKELGIASETIRK 1264
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 31.9 bits (69), Expect = 0.33
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTP---ETRGTAFVVYEDIFDAKN 298
R L+I NL ++S + I ++G I + GN P E RG FV ++ DA+
Sbjct: 387 RKLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARK 446
Query: 299 ACDHLSGFNVCNRYLVVLYYRSNKA 373
A L+ V +R LVV + +K+
Sbjct: 447 ALRGLNKKIVLSRALVVDWAHHHKS 471
>SB_57434| Best HMM Match : LRR_1 (HMM E-Value=3.9e-13)
Length = 337
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT 259
P ++R +++ NLP + + + F KYG + +R + + T
Sbjct: 16 PERLDRTVFVGNLPLTLKKKALKKYFSKYGEVESVRFRSATKMEST 61
>SB_59520| Best HMM Match : RMMBL (HMM E-Value=6.4e-18)
Length = 415
Score = 31.1 bits (67), Expect = 0.58
Identities = 15/39 (38%), Positives = 28/39 (71%)
Frame = +2
Query: 71 IHTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEM 187
++ KMA +++R+A+ +PPE + +L R P+ I+AE+M
Sbjct: 13 LNFKMAASVKRKADSVIPPEESDLL--RITPFNIAAEDM 49
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNA 301
R L++ NLP I E++ F +YG + +++ + E +FV + DI A A
Sbjct: 6 RHLWVGNLPENIREEDIVKHFTRYGRVESVKILPKRSAEGGRASFVDFVDIRSATKA 62
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +2
Query: 125 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
P R L++ N+ + ++ + F +YG + + + P AFV + ++ A A
Sbjct: 245 PGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQA 303
>SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3)
Length = 185
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 341 LVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGISSEDLRK 460
LV+LY SN ++K D D Q+ ++ LK I S LR+
Sbjct: 9 LVLLYDMSNSSYKNFDFDLSQKILELLKAVLLILSSFLRE 48
>SB_49766| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00033)
Length = 630
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 287 DAKNACDHLSGFNVCNRYLVVLYYRSNKA--FKGIDIDKKQEEIDTLKKKYGISSEDL 454
D + LSG CN VVL + K +D+ K +E+ID LKK +L
Sbjct: 9 DEREVNGFLSGVGECNGCRVVLDEINKKLDIILALDVKKMKEDIDELKKSLDFKDAEL 66
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.5 bits (63), Expect = 1.8
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIR 229
+++Y+RNL I+ E++ + + +YGA+ +++
Sbjct: 329 KVVYLRNLSPSITEEKLKEEYSQYGAVDRVK 359
>SB_31762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 254 GTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKA 373
G A VYE I D K+ ++++ F CN Y + +N++
Sbjct: 934 GLALSVYEKIKDKKDKAEYIAIFVACNNYCTLSTNITNRS 973
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET--RGTAFVVYE 277
LYI+NLP + ++F KYG + R+ +T +G F E
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARME 227
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 104 RANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQI 226
R R P+ +++ +I NLP + ++ ++F KYG I +I
Sbjct: 347 RMAARSAPDSHQV-FIGNLPSGVKDADVNEVFSKYGTILEI 386
>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 140 ILYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVYEDIFDAKNACDH 310
++ IRNLP I+A+++ D F + + + I + + G A + + DA A D
Sbjct: 546 VVGIRNLPSSITADQILDFFYGFNVLPETIKIHYLSPGRSSGDAMITFPTSSDAYAAIDQ 605
Query: 311 LS 316
L+
Sbjct: 606 LN 607
>SB_3800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 236 NTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKK 400
+T T T + + I DA + DH S V RY + +KAF+ +D DKK
Sbjct: 22 STESTDSTTAELQKKISDAFDIFDHESNKTVDVRYKPAPEDQLSKAFEVLDQDKK 76
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Frame = +2
Query: 143 LYIRNLP-YKISAEEMY-DIFGKYGAIRQIRV--GNTPE----TRGTAFVVYEDIFDAKN 298
L IR L + + EEM +FGKYG + +++ T E R FV Y D
Sbjct: 206 LEIRTLQIFTLMNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDK 265
Query: 299 ACDHLSGFNV 328
A HL+G ++
Sbjct: 266 AIKHLTGKDI 275
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 101 RRANVRLPPEVNRILYIRNLPYKISAEE-MYDIFGKYGAIRQIRV--GNTPETRGTAFVV 271
RR R P ++ + L +IS ++ + +++ A R +R+ TRG FV
Sbjct: 319 RRQGPRDPGPPTSVIMLHGLRDEISEDDVLQELYAAEVAFRDVRIVRNKIGYTRGFGFVE 378
Query: 272 YEDIFDAKNACDHLSG 319
++ AK D+L G
Sbjct: 379 FDTPEAAKEWMDYLKG 394
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +2
Query: 149 IRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHLSG 319
+ NL + ++ ++F G I +I + T +++G AF+ + DA A + LSG
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 320 F 322
F
Sbjct: 245 F 245
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 27.9 bits (59), Expect = 5.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 140 ILYIRNLPYKISAEEMYDIFGKYGAIRQI 226
++ +NLPY +AEE+ +F +G + ++
Sbjct: 425 VIVAKNLPYGTNAEELRTLFSAFGQLGRV 453
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 27.5 bits (58), Expect = 7.1
Identities = 7/30 (23%), Positives = 18/30 (60%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
L++ N+P++ ++ +FG +G I + +
Sbjct: 70 LHVTNIPFRFRDNDLRQMFGSFGVIADVEI 99
>SB_54554| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 137
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 68 RPIWRNLIHKGAIHSENKR 86
>SB_52808| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 166
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 97 RPIWRNLIHKGAIHSENKR 115
>SB_47515| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 189
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 120 RPIWRNLIHKGAIHSENKR 138
>SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 303
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 234 RPIWRNLIHKGAIHSENKR 252
>SB_36229| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 269
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 200 RPIWRNLIHKGAIHSENKR 218
>SB_20592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 68 RPIWRNLIHKGAIHSENKR 86
>SB_17452| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 189
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 120 RPIWRNLIHKGAIHSENKR 138
>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 404
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 335 RPIWRNLIHKGAIHSENKR 353
>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 299
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 230 RPIWRNLIHKGAIHSENKR 248
>SB_5126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 289 RPIWRNLIHKGAIHSENKR 307
>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1319
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 1250 RPIWRNLIHKGAIHSENKR 1268
>SB_2129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 97 RPIWRNLIHKGAIHSENKR 115
>SB_36062| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 166
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 97 RPIWRNLIHKGAIHSENKR 115
>SB_32612| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 166
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 97 RPIWRNLIHKGAIHSENKR 115
>SB_10785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 132 TSGGNRTFALL*SANAILVWMNYFYSLLNMKIDSC 28
T GN+ F+L AIL +N FY L+++ D+C
Sbjct: 105 TPDGNKGFSL--KLKAILAVLNDFYVLISVLSDTC 137
>SB_8664| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 73
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 4 RPIWRNLIHKGAIHSENKR 22
>SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 328
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 199 RQIWRNKTNKSREHSRNKR 255
R IWRN +K HS NKR
Sbjct: 259 RPIWRNLIHKGAIHSENKR 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,734
Number of Sequences: 59808
Number of extensions: 283968
Number of successful extensions: 769
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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