Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30899
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 178 2e-45
At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing ... 102 1e-22
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 51 5e-07
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 51 5e-07
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 50 1e-06
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 46 1e-05
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 45 4e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 44 6e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 44 6e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 44 6e-05
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 44 8e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 41 4e-04
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 41 4e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 41 4e-04
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 41 6e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 40 8e-04
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 40 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.001
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 40 0.001
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 39 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.002
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.004
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 38 0.004
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 38 0.004
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.004
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.005
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.005
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.007
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.007
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 37 0.009
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 36 0.012
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 36 0.017
At3g01150.1 68416.m00019 polypyrimidine tract-binding protein, p... 36 0.022
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.022
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 35 0.029
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 35 0.029
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.029
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 35 0.029
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 35 0.038
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 34 0.050
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 34 0.050
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 34 0.067
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 34 0.067
At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing ... 34 0.067
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 33 0.088
At2g47980.1 68415.m06004 expressed protein 33 0.12
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 33 0.12
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 33 0.12
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 33 0.15
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 33 0.15
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.20
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 32 0.20
At5g51300.2 68418.m06360 splicing factor-related contains simila... 32 0.27
At5g51300.1 68418.m06359 splicing factor-related contains simila... 32 0.27
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 32 0.27
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 32 0.27
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 31 0.36
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 31 0.36
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 31 0.36
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 31 0.36
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 31 0.36
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.36
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 31 0.36
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 31 0.47
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.47
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.47
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 31 0.62
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.62
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 30 0.82
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 30 0.82
At5g27550.1 68418.m03299 kinesin motor protein-related kinesin-l... 30 1.1
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 30 1.1
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 30 1.1
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 30 1.1
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 30 1.1
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.1
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 1.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 1.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 29 1.4
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 1.4
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 29 1.9
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 29 1.9
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.9
At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing ... 29 1.9
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 1.9
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 1.9
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 2.5
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 2.5
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 28 3.3
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 28 3.3
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 28 3.3
At3g19090.1 68416.m02426 RNA-binding protein, putative similar t... 28 3.3
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.4
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 28 4.4
At1g14340.1 68414.m01699 RNA recognition motif (RRM)-containing ... 27 5.8
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 27 7.7
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 27 7.7
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 27 7.7
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 27 7.7
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 7.7
At1g67020.1 68414.m07620 hypothetical protein 27 7.7
At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protei... 27 7.7
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 178 bits (433), Expect = 2e-45
Identities = 79/117 (67%), Positives = 98/117 (83%)
Frame = +2
Query: 101 RRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 280
R++N RLPPEVNR+LY+RNLP+ I++EEMYDIFGKYGAIRQIR+G T+GTAFVVYED
Sbjct: 7 RKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYED 66
Query: 281 IFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGISSED 451
I+DAKNA DHLSGFNV NRYL+VLYY+ K K D K ++EI L++KYG+S++D
Sbjct: 67 IYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKD 123
>At2g14870.1 68415.m01690 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q10572 Sex determination
protein fox-1 (Feminizing locus on X protein 1)
{Caenorhabditis elegans}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 102 bits (245), Expect = 1e-22
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +2
Query: 104 RANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDI 283
+ N RLPPEV R+LYI NLP+ I++E+ YD+FG+Y IRQ+R+G T+GTAFVVYEDI
Sbjct: 9 KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68
Query: 284 FDAKNACDHL 313
+DAK A DHL
Sbjct: 69 YDAKKAVDHL 78
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ D+F KYG + QI + P G AFV +ED DA +A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 314 SGFNVCNRYLVV 349
G++ +L V
Sbjct: 66 DGYDFDGHHLRV 77
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ D+F KYG + QI + P G AFV +ED DA +A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 314 SGFNVCNRYLVV 349
G++ +L V
Sbjct: 66 DGYDFDGHHLRV 77
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ D+F KYG + QI + P G AFV ++D DA++A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 314 SGFN 325
G++
Sbjct: 66 DGYD 69
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ D+F KYG + QI + P G AFV ++D DA++A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 314 SGFN 325
G++
Sbjct: 66 DGYD 69
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ D+F KYG + QI + P G AFV ++D DA++A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 314 SGFN 325
G++
Sbjct: 66 DGYD 69
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
NR +Y+ NLP I E+ D+F KYG I I + P G AFV +ED DA +A
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 314 SGFN 325
G++
Sbjct: 66 DGYD 69
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/67 (35%), Positives = 35/67 (52%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
L++ NL IS EE++ IF YG IR++R T ++ + D+ AK A L+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVR--RTMHENSQVYIEFFDVRKAKVALQGLNGL 354
Query: 323 NVCNRYL 343
V R L
Sbjct: 355 EVAGRQL 361
Score = 35.5 bits (78), Expect = 0.022
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +2
Query: 131 VNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 310
++RIL++RN+ I E+ +F ++G +R + + RG V Y DI A+ A
Sbjct: 209 LSRILFVRNVDSSIEDCELGVLFKQFGDVRALHTAG--KNRGFIMVSYYDIRAAQKAARA 266
Query: 311 LSGFNVCNRYLVVLY 355
L G + R L + Y
Sbjct: 267 LHGRLLRGRKLDIRY 281
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 44.8 bits (101), Expect = 4e-05
Identities = 28/91 (30%), Positives = 48/91 (52%)
Frame = +2
Query: 86 ALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAF 265
A + Q +PP N IL+I+NLP++ ++ + +F +Y ++IR+ + G AF
Sbjct: 143 APSFQPSGQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAF 198
Query: 266 VVYEDIFDAKNACDHLSGFNVCNRYLVVLYY 358
V YED A A L GF + + +V+ +
Sbjct: 199 VEYEDDVQASIAMQPLQGFKITPQNPMVISF 229
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEE----MYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 286
+PP N+ +YI+NL +I EE +Y +F ++G I + TP+ RG A+V + ++
Sbjct: 6 IPP--NQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 287 DAKNACDHLSGFNVCNRYLVVLYYRS 364
A +A + F ++ + + Y ++
Sbjct: 64 AAGHAVRQMQNFPFYDKPMRLQYAKA 89
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Frame = +2
Query: 122 PPEVNRI--LYIRNLPYKISAEEMYDIFGKYGAIRQI---RVGNTPETRGTAFVVYEDIF 286
PP+++ L + N+ ++ +A+++Y +F KYG + + R T ++RG AFV Y+
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 287 DAKNACDHLSGFNVCNRYLVVLY 355
+A A + L G V R + V +
Sbjct: 69 EAHKAVERLDGRVVDGREITVQF 91
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Frame = +2
Query: 122 PPEVNRI--LYIRNLPYKISAEEMYDIFGKYGAIRQI---RVGNTPETRGTAFVVYEDIF 286
PP+++ L + N+ ++ +A+++Y +F KYG + + R T ++RG AFV Y+
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 287 DAKNACDHLSGFNVCNRYLVVLY 355
+A A + L G V R + V +
Sbjct: 69 EAHKAVERLDGRVVDGREITVQF 91
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 44.0 bits (99), Expect = 6e-05
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Frame = +2
Query: 128 EVNRILYIRNLPYKISAEEM---YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDI---FD 289
+ R L+IRNLP+ ++ EE+ + +FG+ ++ + T GTAFV ++
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVA 617
Query: 290 AKNACDHLSGFNVC--NRYLVVLYYRSNKAFKGIDIDKKQEE 409
A +A D SG V R L V+ KA K I++ K +E+
Sbjct: 618 AISAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEEK 659
Score = 31.1 bits (67), Expect = 0.47
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 313
L IRNLP++ ++ +F G + + + ET +G AFV + DA NA
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 314 SGFNVCNRYLVV 349
+G R + V
Sbjct: 393 NGHMFGKRPIAV 404
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 43.6 bits (98), Expect = 8e-05
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+R +Y+ NLP I E+ DIF KYG I I + P FV +E DA++A
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 314 SGFNV 328
G+N+
Sbjct: 66 DGYNL 70
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
L I N+ +S +E+ +FG YG IR+IR TP R F+ Y D+ DA+ A L+
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREIR--ETPNRRFHRFIEYYDVRDAETALKALN 327
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
L I N+ +S +E+ +FG YG IR+IR TP R F+ Y D+ DA+ A L+
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREIR--ETPNRRFHRFIEYYDVRDAETALKALN 340
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
L++RNLPY + EE+ + F +G I ++ + T +RG A+++Y A A + L
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322
Query: 314 SGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGISSEDLRK 460
+ R L +L + + DK+ + L K + E+ RK
Sbjct: 323 DNSSFQGRLLHILPAKHRET-----SDKQVNDTSNLPKTFKQKREEQRK 366
Score = 34.7 bits (76), Expect = 0.038
Identities = 17/54 (31%), Positives = 34/54 (62%)
Frame = +2
Query: 140 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
IL ++NLP+ + +E+ +FGK+G++ +I + P T+ A V+ + +A+ A
Sbjct: 456 ILLVKNLPFASTEKELAQMFGKFGSLDKIIL---PPTKTMALAVFLEPAEARAA 506
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 131 VNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNAC 304
+ R L++ NLP+ +S ++ ++FG+ G + + + + RG AFV +A+ A
Sbjct: 93 LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAI 152
Query: 305 DHLSGFNVCNRYLVVLYYRSNK 370
D F V R + V + R K
Sbjct: 153 DKFDTFQVSGRIISVSFARRFK 174
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.5 bits (93), Expect = 3e-04
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
LY+ NLPY I++ E+ IFG+ G + +++ T +RG FV I +AK A
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 314 SGFNVCNRYLVV 349
+ + R + V
Sbjct: 178 NSSQIGGRTVKV 189
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKN 298
+PP N IL+I NLP + ++ + +F +Y ++IR+ G AFV YED +
Sbjct: 150 MPP--NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKP--GIAFVEYEDDVQSSM 205
Query: 299 ACDHLSGFNV 328
A L GF +
Sbjct: 206 AMQALQGFKI 215
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/70 (34%), Positives = 37/70 (52%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKN 298
+PP N IL+I NLP + ++ + +F +Y ++IR+ G AFV YED +
Sbjct: 151 MPP--NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKP--GIAFVEYEDDVQSSM 206
Query: 299 ACDHLSGFNV 328
A L GF +
Sbjct: 207 AMQALQGFKI 216
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 41.1 bits (92), Expect = 4e-04
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 313
LY+ N+P ++ D+F +G + + V P+T RG+ +V I AK A L
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 314 SGFNVCNRYLVVLY 355
G V R + V Y
Sbjct: 170 DGTEVGGREMRVRY 183
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 40.7 bits (91), Expect = 6e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
+Y+ NL +++ E+ D F +G IR + V P G AF+ +ED DA++A + G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPP--GYAFLDFEDSRDARDAIREVDGK 61
Query: 323 N 325
N
Sbjct: 62 N 62
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 40.3 bits (90), Expect = 8e-04
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFD 289
L PE L++ NL + +++E + F + G + RV G+T +RG FV Y +
Sbjct: 171 LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAE 230
Query: 290 AKNACDHLSGFNVCNRYLVV 349
+ A + L GF + R + V
Sbjct: 231 METALESLDGFELEGRAIRV 250
Score = 39.5 bits (88), Expect = 0.001
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDA 292
P VN LY NLPY + + + I + + V +T ++RG AFV ++ D
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 293 KNACDHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYGISSEDL 454
D+L G R L V + K K + + ++ + ++SE L
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESL 193
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
+Y+ NL +++ E+ D F +G +R + V P G AF+ +ED DA++A L G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPP--GYAFLDFEDPRDARDAIRALDGK 61
Query: 323 N 325
N
Sbjct: 62 N 62
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAI---RQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+Y+ +P+ ++ ++ +F +YG I IR T +++G AF+ YED A D+L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 314 SGFNVCNRYLVVLYYRSNKAFKGIDIDKKQE 406
+G V R + V + + K + D + +++
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQ 128
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
P N IL+++NLP++ + + +F +Y +++R+ G AFV + D + A
Sbjct: 172 PAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKP--GIAFVEFADEMQSTVA 229
Query: 302 CDHLSGFNVCNRYLVVLY 355
L GF + +++ Y
Sbjct: 230 MQGLQGFKIQQNQMLITY 247
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
LY++NL IS E++ +IF +G + +V P ++G+ FV + +A A LS
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 193
Query: 317 GFNVCNRYLVV 349
G + ++ L V
Sbjct: 194 GKMIESKPLYV 204
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
+Y++NL + +++ + FG+YG I V E ++G FV +E+ DA A + L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 317 G 319
G
Sbjct: 91 G 91
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
LY++NL ++ + +IFG YG I +V ++G FV + + ++K A +L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 317 GFNVCNRYLVV 349
GF V + +VV
Sbjct: 366 GFLVDGKPIVV 376
Score = 32.7 bits (71), Expect = 0.15
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
+Y++NL ++ + ++ +F +YG + + V +RG FV + + +AK A + L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLC 263
Query: 317 GFNVCNRYLVV 349
G + ++ L V
Sbjct: 264 GLQLGSKKLFV 274
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPETRGTAFVVYEDIFDAKNACDHLSG 319
LY++NL I++ + +F +G+I + V +++G FV ++ A +A L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 320 FNVCNRYLVV 349
V + L V
Sbjct: 174 SMVYGKKLFV 183
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
L I NL +S+ + IF YG ++Q+R TP R FV + D+ DA A ++G
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVR--ETPCKREQRFVEFFDVRDAAKALRVMNGK 242
Query: 323 NVCNRYLVVLYYR 361
+ + +V+ + R
Sbjct: 243 VISGKPMVIQFSR 255
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 38.7 bits (86), Expect = 0.002
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
+Y++NL +S EE+ +FG++G + E ++G FV +E+ DA A D L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 317 G 319
G
Sbjct: 286 G 286
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
LY++NL ++ +++ + F +G I +V P +RG+ FV + +A A ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 317 GFNVCNRYLVV 349
G + + L V
Sbjct: 389 GKMIVTKPLYV 399
Score = 30.3 bits (65), Expect = 0.82
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR---GTAFVVYEDIFDAKNACDHL 313
LY+ +L ++ ++++ F + G + +RV TR G +V Y DA A + L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 314 SGFNVCNRYLVVLY 355
+ + R + V+Y
Sbjct: 107 NFMALNGRAIRVMY 120
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.9 bits (84), Expect = 0.004
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYG-AIRQIRVGN-TPETRGTAFVVYEDIFDAKNACDHLS 316
LYI NL ++S E ++ +F +G IR + + E+RG AF+ +E A A H+
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 317 GFNVCNRYLVVLYYRSNKAFKGIDI 391
G + + L V R+ K G DI
Sbjct: 79 GRLIGQKILCV--QRTPKVEDGRDI 101
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 37.9 bits (84), Expect = 0.004
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +2
Query: 128 EVNR-ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNAC 304
+VN+ L + NL +S ++ +IFG YG I++IR TP R FV + D+ A A
Sbjct: 218 DVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIR--ETPNKRHHKFVEFFDVRSADAAL 275
Query: 305 DHLSGFNVCNRYLVVLYYRSNKAFKGIDIDKKQE 406
L+ + + + + + R A + + + E
Sbjct: 276 KALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPE 309
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
LY+ NL + ++ +++ +F +G + ++ V +T ++RG AFV+Y DA A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 314 SGFNVCNRYLVV 349
+ R L V
Sbjct: 119 DAKILNGRKLTV 130
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 98 QRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVV 271
Q R N R LY++NL + E++ ++F +YG + +V P+ +RG FV
Sbjct: 320 QERIN-RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVA 378
Query: 272 YEDIFDAKNACDHLSG 319
Y + +A A ++G
Sbjct: 379 YSNPEEALRALSEMNG 394
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
+Y++NLP +I +E+ FGK+G I V + +R FV +E A +A + ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 317 GFNVCNRYLVVLYYRSNKAFKGIDIDKK--QEEIDTLKKKYG 436
G ++ + L V K+ + ++ +K QE I+ +K G
Sbjct: 291 GISLGDDVLYV-GRAQKKSEREEELRRKFEQERINRFEKSQG 331
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT--AFVVYEDIFDAKNACDHLS 316
+Y+ LPY I+ E + +F YG++ +++ N RG FV + + A +A + +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 317 GFNVCNR 337
G ++ R
Sbjct: 69 GKSIGGR 75
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHL 313
L +RN+P EE+ + F ++G +R + + + + RG AFV + D +DA A +
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 314 SGFNVCNRYLVVL 352
+ + R + V+
Sbjct: 109 NRRSFAGREITVV 121
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +2
Query: 101 RRANVRLPPEVNR--ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVG---NTPETRGTAF 265
R+A V PP N+ +LYI +P+ E+ F ++G ++++RV T +++ F
Sbjct: 46 RKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGF 105
Query: 266 VVYEDIFDAKNACDHLSGFNVCNRYLVV 349
+ +ED A+ A ++ + + L V
Sbjct: 106 IQFEDPEVAEIAAGAMNDYLLMEHMLKV 133
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.1 bits (82), Expect = 0.007
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
LY++NL ++ E++ ++F ++G I +V P ++G+ FV + +A + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 317 GFNVCNRYLVV 349
G V + L V
Sbjct: 390 GKMVGGKPLYV 400
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVG--NTPETRGTAFVVYEDIFDAKNACDHLS 316
L+++NL + + +++ F G I +V + ++RG FV ++ AKNA + L+
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 317 G 319
G
Sbjct: 196 G 196
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 316
+Y++NL + +E+ FG+YG+I V ++R FV +E+ DA A + L+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 317 G 319
G
Sbjct: 287 G 287
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
LY+ +L + ++ ++YD F + + +RV T + G +V Y + DA+ A L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 314 SGFNVCNRYLVVLYYRS 364
+ ++ N ++ + Y S
Sbjct: 108 N-YSYLNGKMIRITYSS 123
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 36.7 bits (81), Expect = 0.009
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDA 292
PP +++L++RNLP++ + EE+ ++ +G + + N R AF+ +ED+ A
Sbjct: 15 PP--SKVLHLRNLPWECTEEELIELGKPFGTVVNTKC-NVGANRNQAFIEFEDLNQA 68
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 36.3 bits (80), Expect = 0.012
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRG-TAFVVYEDIFDAKN 298
+++ NLP + E++Y+ F +GAIR+ I+V + PE + FV +E+ KN
Sbjct: 277 IFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEAVKN 331
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 35.9 bits (79), Expect = 0.017
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +2
Query: 116 RLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAK 295
R PP +R L++ NLP+ I E+ D F ++G + + R AFV + DA
Sbjct: 18 RNPP--SRHLWVGNLPHGILERELADRFLRFGELESLAF---QPGRSYAFVNFNHDEDAF 72
Query: 296 NACDHLSGFNVCNRYLVVLYYRSNKAFKGIDID 394
A + L GF + L + + ++ K+ G D
Sbjct: 73 AAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTD 105
>At3g01150.1 68416.m00019 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Sus scrofa} SP|Q29099, {Mus musculus}
SP|P17225; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDA 292
++++++RNLP++ EE+ D+ ++G I + N R AFV + D+ A
Sbjct: 16 SKVVHLRNLPWECVEEELIDLCKRFGKIVNTK-SNVGANRNQAFVEFADLNQA 67
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 35.5 bits (78), Expect = 0.022
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
L++ +L + + ++ ++FG+YG I +I V + +RG AF+ Y + +A A + L G
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS---SRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 323 NV 328
N+
Sbjct: 77 NL 78
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRGT--AFVVYEDIFDAKNA 301
+Y+RNLP ISA E+ + F +G I+ + + + G AFV +ED+ +NA
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 315
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 35.1 bits (77), Expect = 0.029
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRGT--AFVVYEDIFDAKNA 301
+Y+RNLP ISA E+ + F +G I+ + + + G AFV +ED+ +NA
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENA 374
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVG---NTPETRGTAFVVYEDIFDAKNACDHL 313
L+I L + + + + D F +G + ++R+ + +RG FV + + DA +A D +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 314 SGFNVCNRYLVVLY 355
G + R L + +
Sbjct: 103 DGKGLLGRPLRISF 116
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 35.1 bits (77), Expect = 0.029
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAK 295
P E LY++NL +S + + + F ++G I + + RG AFV +++ DA+
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDAR 255
Query: 296 NACDHLSGFNVCNRYLVV 349
A + ++G ++ L V
Sbjct: 256 RAAETVNGTKFGSKCLYV 273
Score = 33.1 bits (72), Expect = 0.12
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
++++NLP ++ + D+F K+G I +V + +RG FV +E A A L+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 317 GFNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKK 430
V ++ + V K K D K +E+ L K
Sbjct: 174 STIVADKEIYV-----GKFMKKTDRVKPEEKYTNLYMK 206
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 34.7 bits (76), Expect = 0.038
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 313
+++ +L S E++ +FG G + ++R+ P+T +G+AF+ + + AK A L
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 314 SGFNVCNRYLVVLYYRSNKAFKGIDIDK--KQEEIDTLKKKYGISSED 451
+ + V + N +I K E + K YG+ + D
Sbjct: 276 KSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMD 323
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 34.3 bits (75), Expect = 0.050
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDH 310
+Y+ LP+ E + F ++G I +V G T ++G FV + ++ A AC++
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.3 bits (75), Expect = 0.050
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
LY++NL ++ E++ ++F +YG + +V + +RG FV Y + +A A ++
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 317 GFNVCNRYLVV 349
G + + L V
Sbjct: 390 GKMIGRKPLYV 400
Score = 33.9 bits (74), Expect = 0.067
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
+Y++NLP +I+ +E+ FGKYG I + + +R FV + A A + ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 317 GFNVCNRYLVVLYYRSNKAFKGIDIDKK--QEEIDTLKKKYG 436
G ++ L V K+ + ++ +K QE I +K G
Sbjct: 287 GISLGEDVLYV-GRAQKKSDREEELRRKFEQERISRFEKLQG 327
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +2
Query: 86 ALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN--TPETRGT 259
A+A A L N LY+ +L ++ + D+F + + +RV T + G
Sbjct: 28 AVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGY 87
Query: 260 AFVVYEDIFDAKNACDHLS 316
A+V + + DA A + L+
Sbjct: 88 AYVNFANPEDASRAMESLN 106
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAI---RQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+++ +P ++ +E+ D F KYG + + IR T +RG FV IFD++ D L
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV----IFDSEEVVDEL 166
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 33.9 bits (74), Expect = 0.067
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAI---RQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+++ +P ++ +E+ D F KYG + + IR T +RG FV IFD++ D L
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV----IFDSEEVVDEL 166
>At1g21312.1 68414.m02663 RNA recognition motif (RRM)-containing
protein contains Pfam profile PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain
Length = 210
Score = 33.9 bits (74), Expect = 0.067
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 119 LPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
LPP+V+ LY+ LP S E+ IF + R++R+
Sbjct: 106 LPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRL 143
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 33.5 bits (73), Expect = 0.088
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
R +++ N Y+ ++ +F KYG RV G AFV +ED DA++A L
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYG-----RVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Query: 317 GF 322
F
Sbjct: 57 NF 58
>At2g47980.1 68415.m06004 expressed protein
Length = 1098
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -1
Query: 355 VEYNQIPVTNIKTR*MVTGIFCIKYIFINNKCCASCFWSVPYSYLSYCAIFAEDIIHFFS 176
V + QI R + TG+F +Y I+N SC S+ LSY ++F +D+ +
Sbjct: 255 VTHEQITTLEDMMRKIFTGLFVHRYRDIDNDIRMSCIQSLGIWILSYPSLFLQDLYLKYL 314
Query: 175 GY 170
G+
Sbjct: 315 GW 316
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
+R L++RN+ + E+ +F +YG IR + T + RG + Y DI A+ A
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDIRTLY--TTCKHRGFVMISYYDIRSARMA 220
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
+R L++RN+ + E+ +F +YG IR + T + RG + Y DI A+ A
Sbjct: 167 SRTLFVRNINSNVEDSELTALFEQYGDIRTLY--TTCKHRGFVMISYYDIRSARMA 220
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNAC 304
+Y+ LP+ E + + F ++G I + V T ++G FV ++D A AC
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 32.7 bits (71), Expect = 0.15
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 173 SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVL 352
S +++ FG+ R IR T +G F+ ++ DA+ A L G V R + V
Sbjct: 22 SLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
Query: 353 YYRSNKAFK-GIDIDKKQE 406
++ + + GI+ +K ++
Sbjct: 82 VAKNAEEVRAGINSNKAED 100
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACD 307
+++ L + E MYD F KYG I + + + T ++G FV ++D A AC+
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACE 76
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 128 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKN 298
E R +YI N+P ++ E++ + ++GA+ +++V + +R F + + DA
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 299 ACDHLSGFNVCNRYLVV 349
+ L+G V R + V
Sbjct: 133 VVEKLNGNTVEGREIKV 149
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.9 bits (69), Expect = 0.27
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHL 313
LYI LP + + + ++F +G I +V T ++G FV Y D+ A A +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 314 SGFNVCNRYLVV 349
+G+ R L V
Sbjct: 542 NGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 31.9 bits (69), Expect = 0.27
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACDHL 313
LYI LP + + + ++F +G I +V T ++G FV Y D+ A A +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 314 SGFNVCNRYLVV 349
+G+ R L V
Sbjct: 542 NGYRFEGRTLAV 553
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNAC 304
+R LY+ NL + +S ++ IF +G + +++ PET +G F+ + + +K A
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQ 323
Query: 305 DHLSG 319
L+G
Sbjct: 324 IALNG 328
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 31.9 bits (69), Expect = 0.27
Identities = 20/99 (20%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Frame = +2
Query: 149 IRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHLSG 319
++ L K + E++Y I ++G + +RV N+ +RG AF+ + + A+ D +
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 320 FNVCNRYLVVLYYRSNKAFKGIDIDKKQEEIDTLKKKYG 436
+ ++++ S + + ++QE ++ YG
Sbjct: 362 DGIVLDGRKLMFHYSQPTGRA-GVSRRQEHAS--RRSYG 397
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 31.5 bits (68), Expect = 0.36
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYE-DIFDAKNACDHLSG 319
+Y+RNLP+ + ++ ++F +GAI+ + +G F E + K + S
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEASP 354
Query: 320 FNVCNRYLVVLYYRSN 367
+ +R VV ++N
Sbjct: 355 VTIGDRQAVVEEKKTN 370
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIR 229
N +YI NLP ++ +E+ D+FG G + +I+
Sbjct: 279 NARIYISNLPPDVTTDELKDLFGGIGQVGRIK 310
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIR 229
N +YI NLP ++ +E+ D+FG G + +I+
Sbjct: 279 NARIYISNLPPDVTTDELKDLFGGIGQVGRIK 310
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 31.5 bits (68), Expect = 0.36
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 313
+Y+ NLP+ + + + +F ++G + RV + ET RG FV + + A L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 314 SGFNVCNRYLVV 349
G N+ R + V
Sbjct: 269 DGQNLEGRAIKV 280
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +2
Query: 131 VNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNA 301
+ R L + +P+ I ++ + D K+G + V +T +RG +V + DAKNA
Sbjct: 1 MERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 0.36
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
R +Y+ N Y ++ +F K+G ++++ + + G AFV +ED DA++A
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS-----GYAFVYFEDERDAEDA 51
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 31.5 bits (68), Expect = 0.36
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 140 ILYIRNLPYKISAEEMYDIFGKYGAIRQ-------IRVGNTPETRGTAFVVYEDIFDAKN 298
+LYI+NL + ++ Y IFG + +R+ RG AF+ + + A
Sbjct: 353 VLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAHR 412
Query: 299 ACDHLSGFNVCNRYLVVLYYRSNKAFK 379
A + ++GF + +++ + R+ A K
Sbjct: 413 ALNLVNGFVFKGKPMIIQFGRTPGAAK 439
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 322
L +R+LP I + + +F +YGA +R + + R AFV +++ A A L+G
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGA-SAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGL 88
Query: 323 NVCNRYLVVLYYRSNK 370
+ L V R+NK
Sbjct: 89 RFLGKVLQV--QRANK 102
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 31.1 bits (67), Expect = 0.47
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIR--VGNTPETRGTAFVVYEDIFDAKNACDH 310
+ L++ NLPY+ + D F K G + +++ V + G FV + + +A+ A
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQK 186
Query: 311 LSG 319
+G
Sbjct: 187 KNG 189
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.1 bits (67), Expect = 0.47
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVG--NTPETRGTAFVVYEDIFDAKNACDHLS 316
L +N+P+ + E++ +F KYG++ I + RG F+ +A A L
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 317 GFNVCNRYLVVLYYRSNK 370
R L V Y ++ K
Sbjct: 156 SCEYEGRRLKVDYAKTKK 173
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 31.1 bits (67), Expect = 0.47
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPE--TRGTAFVVYEDIFDAKNACDHLS 316
++++NL I +++ D+F +G + +V ++G FV + AC+ +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 317 GFNVCNRYLVV 349
G + N+++ V
Sbjct: 93 GTLIRNQHIHV 103
Score = 31.1 bits (67), Expect = 0.47
Identities = 17/71 (23%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIR--QIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
LY++NL + ++ ++F ++G I ++ V + ++G FV + +A A ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 317 GFNVCNRYLVV 349
G V N+ + V
Sbjct: 285 GKMVGNKPIYV 295
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 30.7 bits (66), Expect = 0.62
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP 244
R +++ NLP K+ + + F K+G + +R+ + P
Sbjct: 171 RTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIF-GK---YGAIRQIRVGNTPET---RGTAFVVYE 277
R +++ NLP+ + EE+Y +F GK +I +RV P +G A+V+++
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFK 336
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 30.7 bits (66), Expect = 0.62
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 113 VRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRG----TAFVVYED 280
+R P + LY+ LP ++ D F G + +++ T + G T FV +
Sbjct: 556 IRCFPSRKKTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQL--TTKRNGLRLSTGFVEFAS 613
Query: 281 IFDAKNACDHLSGFNVCNRYLVV 349
+AK A D +G +C L++
Sbjct: 614 ANEAKKALDMKNGEYLCGNKLIL 636
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVG---NTPETRGTAFVVYEDIFDAKNA 301
R +Y+ N+P+ + A+ + + F YG + + +G T ++RG A VY+ A+ A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAA 224
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVG---NTPETRGTAFVVYEDIFDAKNA 301
R +Y+ N+P+ + A+ + + F YG + + +G T ++RG A VY+ A+ A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAA 224
>At5g27550.1 68418.m03299 kinesin motor protein-related kinesin-like
heavy chain - Arabidopsis thaliana, EMBL:AF080249
Length = 425
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +2
Query: 122 PPEVNRILYIRNLPYKISAEEMYDI----FGKYGAIRQIRVGNTPETRGTAFVVYEDIFD 289
P + ++ + P S + Y++ +G+ G + + TPE RG + E++F
Sbjct: 92 PDDGQETVFAQTKPIVTSVLDGYNVCIFAYGQTGTGKTFTMEGTPENRGVNYRTLEELFR 151
Query: 290 AKNACDHLSGFNV 328
+ HL F +
Sbjct: 152 CSESKSHLMKFEL 164
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 29.9 bits (64), Expect = 1.1
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNAC 304
N +YI N+ ++S +YDI + G + + + ET +G AF YE A A
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 305 DHLSGF-NVCNRYL 343
SG ++ NR L
Sbjct: 66 KLFSGLVSLYNRTL 79
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.9 bits (64), Expect = 1.1
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQI 226
+ LY++N+P S E++ ++F ++G + +I
Sbjct: 292 KALYVKNIPENTSTEQLKELFQRHGEVTKI 321
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
N LY+ L + ++ +F +YG +R + + R AFV + D DA +A +L
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDM-----KRDYAFVEFSDPRDADDARYYL 64
Query: 314 SG 319
G
Sbjct: 65 DG 66
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
N LY+ L + ++ +F +YG +R + + R AFV + D DA +A +L
Sbjct: 10 NTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDM-----KRDYAFVEFGDPRDADDARHYL 64
Query: 314 SG 319
G
Sbjct: 65 DG 66
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
R LY+ L ++ +++ D F +G I IR+ + AFV Y A+ A + LS
Sbjct: 228 RTLYVGGLNSRVLEQDIRDQFYAHGEIESIRI---LAEKACAFVTYTTREGAEKAAEELS 284
Query: 317 GFNVCN 334
V N
Sbjct: 285 NRLVVN 290
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIR 220
+Y+RNLP+ + ++ ++F +GAI+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIK 320
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVYEDIFDAKNACDHL 313
+++ +P + +E + F ++G +++ +R +T +RG FV YE +++ DHL
Sbjct: 132 IFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYE----SEDMVDHL 187
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVYED 280
+++ L + ++ E FGKYG I ++ T + RG FV Y D
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 107 ANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQ 223
AN +PP N + ++NLP + + + F ++G IR+
Sbjct: 1066 ANATIPPANNAAICVKNLPLNATIALVENAFKQFGEIRR 1104
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNACDHL 313
+++ + Y + + F KYG + ++ T +RG AFV + +A NA L
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 314 SGFNVCNRYLVVLY 355
G ++ R + V Y
Sbjct: 95 DGQDLHGRRIRVNY 108
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 125 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
P++ +L + NLP S E + +IFGK G+I+ + +
Sbjct: 190 PKIFTVL-VENLPEDHSNENIREIFGKAGSIKSVSI 224
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 125 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
P++ +L + NLP S E + +IFGK G+I+ + +
Sbjct: 190 PKIFTVL-VENLPEDHSNENIREIFGKAGSIKSVSI 224
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 313
LY+ +PY+ + +E+ F G I ++ PE G AF+ ++ AK A
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL-AF 221
Query: 314 SGFNVCNRYLVVLYY 358
+ +RYL + Y
Sbjct: 222 DRAAMGDRYLTIQQY 236
>At2g28530.1 68415.m03466 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 236
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/37 (27%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Frame = +2
Query: 140 ILYIRNLPYKISAEEMY---DIFGKYGAIRQIRVGNT 241
++Y+ +LP+ ++ E+M+ + FG+YG + ++ + T
Sbjct: 110 LVYVMSLPFDLADEDMFQRREYFGQYGKVVKVAMSRT 146
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNA 301
+R +++ LP++ + E + +F YG I + V T + +G FV+++ AK A
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIFDAKNA 301
+R +++ LP++ + E + +F YG I + V T + +G FV+++ AK A
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEA 161
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 107 ANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQI--RVGNTPETRGTAFVVY 274
A V+LP N LY+R L + + E+ ++F +YG I I + + RG AFV +
Sbjct: 199 APVQLPD--NPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQF 254
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLS 316
+ LY+ L +I +++ D F +G I IR+ + AFV Y A+ A LS
Sbjct: 228 KTLYVGGLNSRILEQDIRDQFYAHGEIESIRI---LADKACAFVTYTSREGAEKAAQELS 284
Query: 317 GFNVCN 334
V N
Sbjct: 285 NRLVIN 290
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 71 IHTKMALALQRRAN---VRLPPEVNRI--LYIRNLPYKISAEEMYDIFGKYGAIRQIRV 232
++ +A+ L R+A PPE I LY+ L +I ++++D F YG + IRV
Sbjct: 198 VNDPVAMKLLRKAGEMGTLEPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 119 LPPEVNR---ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFD 289
L P+V R +I NL K E++ FG G + IR+ + +T + Y D D
Sbjct: 642 LKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 119 LPPEVNR---ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFD 289
L P+V R +I NL K E++ FG G + IR+ + +T + Y D D
Sbjct: 642 LKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
RNA-binding protein homolog GB:AAF00075 GI:6449448 from
[Brassica napus]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 455
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT 259
R + NLP S + + IFG G ++ IR+ + PE+ +
Sbjct: 236 RTVVAENLPDDHSYQNLEKIFGVVGNVKAIRICHPPESNSS 276
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.9 bits (59), Expect = 4.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPE----TRGTAFVVYEDIFDAKNAC 304
LY+ NL K+ + FG++G I +++ T E R FV + + D + A
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAAK 240
Query: 305 DHLSGFNV 328
D + G V
Sbjct: 241 DEMQGIIV 248
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 387 ILIRNKKKLIH*KRNMEYLVKICVNDKL 470
ILI N+ K++ R+++ ++KIC NDKL
Sbjct: 615 ILIMNRHKIMKETRSIDDMIKIC-NDKL 641
>At1g14340.1 68414.m01699 RNA recognition motif (RRM)-containing
protein
Length = 244
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 149 IRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNA 301
+ L ++ ++ D F G I+ I + + E TA+V+++D + + A
Sbjct: 11 VTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETA 61
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 344 VVLYYRSNKAFKGIDIDKKQEEIDTLKKK 430
+VL+YRS+K F G I + E LKK+
Sbjct: 329 LVLHYRSSKKFLGDKIAVSERESSLLKKE 357
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQI 226
+ LYI+NLP I+ E + +F +G I ++
Sbjct: 34 KALYIKNLPRDITQERLKALFEHHGKILKV 63
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR---GTAFVVYEDIFDAKNACDHL 313
LY+ L +++ +++ F K G + + P TR G AFV + DA+ +L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 314 S 316
+
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 143 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR---GTAFVVYEDIFDAKNACDHL 313
LY+ L +++ +++ F K G + + P TR G AFV + DA+ +L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 314 S 316
+
Sbjct: 133 N 133
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 137 RILYIRNLPYKISAEEMYDIFGKYGAIRQI 226
+ LYI+NLP I+ E + +F +G I ++
Sbjct: 268 KALYIKNLPRDITQERLKALFEHHGKILKV 297
>At1g67020.1 68414.m07620 hypothetical protein
Length = 659
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 359 RSNKAFKGIDIDKKQEEIDTLKKKYGISSEDLR 457
R NK+F+ + + K+ LKK ISSE+L+
Sbjct: 349 RKNKSFQSLRLKKQAHMSRDLKKLESISSEELQ 381
>At1g50300.1 68414.m05639 zinc finger (Ran-binding) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|Q27294 RNA-binding protein cabeza {Drosophila
melanogaster}; contains Pfam profiles: PF00076 RNA
recognition motif (aka RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 372
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Frame = +2
Query: 134 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTP-----------ETRGTAFVVYED 280
N +Y+ NLP + D FG G +++ + TP E +G A V YED
Sbjct: 7 NGSVYVSNLPLGTDENMLADYFGTIGLLKRDKRTGTPKVWLYRDKETDEPKGDATVTYED 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,099,330
Number of Sequences: 28952
Number of extensions: 202682
Number of successful extensions: 775
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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