Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30898
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15218-1|CAA33288.1|  728|Homo sapiens protein ( Human ski oncog...    30   9.9  
AY334557-1|AAP97864.1|  168|Homo sapiens ski oncoprotein protein.      30   9.9  
AL590822-8|CAI12482.1|  728|Homo sapiens v-ski sarcoma viral onc...    30   9.9  

>X15218-1|CAA33288.1|  728|Homo sapiens protein ( Human ski oncogene
           mRNA. ).
          Length = 728

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 537 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 647
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 443 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 480


>AY334557-1|AAP97864.1|  168|Homo sapiens ski oncoprotein protein.
          Length = 168

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 537 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 647
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 120 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 157


>AL590822-8|CAI12482.1|  728|Homo sapiens v-ski sarcoma viral
           oncogene homolog (avian) protein.
          Length = 728

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 537 PKATTTCTRPRTR-FSLKKPARSRTLAPKTKASRSRDS 647
           P+   TCT+PR R  ++  P    TLAP       +DS
Sbjct: 443 PEPLATCTQPRKRKLTVDTPGAPETLAPVAAPEEDKDS 480


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,085,896
Number of Sequences: 237096
Number of extensions: 1720781
Number of successful extensions: 9301
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9301
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)