Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30898
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    28   7.9  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   7.9  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   7.9  

>AF026212-4|AAF99973.2|  386|Caenorhabditis elegans Hypothetical
           protein F52G3.5 protein.
          Length = 386

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 546 TTTCTRPRTRFSL-KKPARSRTLAPKTKASRSRDSTNTLAPDGVTYRVDYTADEN 707
           TTT   P T     KK  ++R+  PKT  + +  +T T AP   T     T +E+
Sbjct: 195 TTTTEEPSTTSEYRKKSKKNRSKRPKTTKTTTTSTTTTEAPTTTTEEYTTTTEED 249


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 151 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 23
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 476 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 571
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 476 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 571
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 151 AAWLIDEWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 23
           +AW  D    + +N +  E + LS+   Q+HC+    CQ+D +
Sbjct: 501 SAWC-DSTNTTTLNCLTTEGAKLSTKENQKHCKCIQPCQQDQY 542


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 476 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 571
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 476 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 571
           P+G   ++ Y  I Y N V P G + LY  ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,571
Number of Sequences: 27780
Number of extensions: 249126
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)